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SCNpilot_cont_300_bf_scaffold_74_curated

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Displaying items 1-30 of 377 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_74_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..108)
DNA (108bp) protein (36aa)
Elongation factor Tu n=1 Tax=Variovorax paradoxus B4 RepID=T1XHY7_VARPD
translation elongation factor tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_74_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(251..2350)
DNA (2100bp) protein (700aa)
Elongation factor G n=1 Tax=Variovorax paradoxus (strain S110) RepID=EFG_VARPS rbh
translation elongation factor G; K02355 elongation factor G
Elongation factor G {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_74_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(2447..2920)
DNA (474bp) protein (158aa)
30S ribosomal protein S7 n=2 Tax=Variovorax RepID=RS7_VARPS rbh
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_74_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(3074..3382)
DNA (309bp) protein (103aa)
30S ribosomal protein S12 n=1 Tax=Curvibacter lanceolatus RepID=UPI0001056121
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_74_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3659..4828)
DNA (1170bp) protein (390aa)
beta-lactamase (EC:3.5.2.6); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Beta-lactamase {ECO:0000313|EMBL:ADU39754.1}; EC=3.5.2.6 {ECO:0000313|EMBL:ADU39754.1};; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Beta-lactamase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBF4_VARPE
SCNpilot_cont_300_bf_scaffold_74_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4869..5501)
DNA (633bp) protein (211aa)
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00037A70FA
Variovorax paradoxus strain MEDvA23 contig_86, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21732.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
transmembrane protein; K07018
SCNpilot_cont_300_bf_scaffold_74_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5538..5891)
DNA (354bp) protein (118aa)
Ferredoxin-like protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBF6_VARPE
ferredoxin-like protein
Ferredoxin-like protein {ECO:0000313|EMBL:ADU39756.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5901..7058)
DNA (1158bp) protein (386aa)
Putative integral membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2L118_9BURK
Variovorax paradoxus strain MEDvA23 contig_69, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25360.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
vanz family protein
SCNpilot_cont_300_bf_scaffold_74_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7070..7498)
DNA (429bp) protein (143aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CUU1_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL78964.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K08973 putative membrane protein
SCNpilot_cont_300_bf_scaffold_74_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7866..8852
DNA (987bp) protein (329aa)
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hemB; delta-aminolevulinic acid dehydratase HemB (EC:4.2.1.24)
delta-aminolevulinic acid dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI0003660921
SCNpilot_cont_300_bf_scaffold_74_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8872..10038
DNA (1167bp) protein (389aa)
magnesium transporter CorA n=1 Tax=Variovorax paradoxus RepID=UPI00037B2BA4
mg2 transporter protein cora family protein
Mg2 transporter protein CorA family protein {ECO:0000313|EMBL:ADU39760.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10126..10494)
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XIL9_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU52164.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_74_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10714..11040)
DNA (327bp) protein (109aa)
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00037DF6B6
CLR family protein
Uncharacterized protein {ECO:0000313|EMBL:ADU39762.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11158..12066
DNA (909bp) protein (303aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2L123_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL78968.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_74_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12111..12794)
DNA (684bp) protein (228aa)
carboxymethylenebutenolidase (EC:3.1.1.45); K01061 carboxymethylenebutenolidase [EC:3.1.1.45]
Dienelactone hydrolase-like enzyme n=1 Tax=Variovorax sp. CF313 RepID=J3CUU6_9BURK
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:EJL78969.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_74_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12847..13452)
DNA (606bp) protein (202aa)
2-hydroxychromene-2-carboxylate isomerase n=1 Tax=Variovorax sp. CF313 RepID=J2KFH8_9BURK
2-hydroxychromene-2-carboxylate isomerase {ECO:0000313|EMBL:EJL78970.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
dsba oxidoreductase
SCNpilot_cont_300_bf_scaffold_74_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13524..14270
DNA (747bp) protein (249aa)
Putative dehydrogenase/reductase n=1 Tax=Variovorax paradoxus B4 RepID=T1XI01_VARPD
short-chain dehydrogenase/reductase SDR
Putative dehydrogenase/reductase {ECO:0000313|EMBL:AGU52168.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_74_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14274..14927
DNA (654bp) protein (218aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000372A68F
multiple antibiotic resistance (marc)-like protein; K05595 multiple antibiotic resistance protein
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14936..15409)
DNA (474bp) protein (158aa)
thymocyte nuclear protein 1 n=1 Tax=Variovorax paradoxus RepID=UPI000378BCC1
EVE domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EJL78973.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_74_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15417..16583)
DNA (1167bp) protein (389aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E68BC
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU39769.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16618..18474)
DNA (1857bp) protein (619aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-forming long-chain acyl-CoA synthetase n=1 Tax=Variovorax sp. CF313 RepID=J2KFI5_9BURK
AMP-forming long-chain acyl-CoA synthetase {ECO:0000313|EMBL:EJL78975.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_74_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18483..19256)
DNA (774bp) protein (258aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBH1_VARPE
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADU39771.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19525..20346)
DNA (822bp) protein (274aa)
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E53A7
Variovorax paradoxus strain MEDvA23 contig_69, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25348.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative branched-chain amino acid ABC transporter, ATP-binding protein
SCNpilot_cont_300_bf_scaffold_74_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20343..21419)
DNA (1077bp) protein (359aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000368FDD2
putative branched-chain amino acid ABC transporter, permease protein
Putative branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU52175.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_74_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21427..22302)
DNA (876bp) protein (292aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00037E3877
putative branched-chain amino acid ABC transporter, permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADU39774.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22317..23147)
DNA (831bp) protein (277aa)
AraC family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035E26E6
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AGU52177.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_74_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23259..24200)
DNA (942bp) protein (314aa)
acetyl hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI0003605176
alpha/beta hydrolase folD-3 domain-containing protein
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ADU39776.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_74_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24264..25466)
DNA (1203bp) protein (401aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacte
phosphoribosylglycinamide formyltransferase 2 (EC:4.1.1.21); K08289 phosphoribosylglycinamide formyltransferase 2 [EC:2.1.2.2]
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Variovorax sp. CF313 RepID=J2TK87_9BURK
SCNpilot_cont_300_bf_scaffold_74_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25645..26493
DNA (849bp) protein (283aa)
hbd; 3-hydroxybutyryl-CoA dehydrogenase Hbd (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000379069B
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL78983.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_74_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26528..27343
DNA (816bp) protein (272aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBH9_VARPE
Variovorax paradoxus strain MEDvA23 contig_69, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25341.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
enoyL-CoA hydratase/isomerase
Displaying items 1-30 of 377 in total

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