name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_cont_300_bf_scaffold_74_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..108)
|
Elongation factor Tu n=1 Tax=Variovorax paradoxus B4 RepID=T1XHY7_VARPD
translation elongation factor tu; K02358 elongation factor Tu
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(251..2350)
|
Elongation factor G n=1 Tax=Variovorax paradoxus (strain S110) RepID=EFG_VARPS
rbh
translation elongation factor G; K02355 elongation factor G
Elongation factor G {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2447..2920)
|
30S ribosomal protein S7 n=2 Tax=Variovorax RepID=RS7_VARPS
rbh
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000255|HAMAP-Rule:MF_00480}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3074..3382)
|
30S ribosomal protein S12 n=1 Tax=Curvibacter lanceolatus RepID=UPI0001056121
rpsL; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3659..4828)
|
beta-lactamase (EC:3.5.2.6); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4]
Beta-lactamase {ECO:0000313|EMBL:ADU39754.1}; EC=3.5.2.6 {ECO:0000313|EMBL:ADU39754.1};; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Beta-lactamase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBF4_VARPE
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4869..5501)
|
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00037A70FA
Variovorax paradoxus strain MEDvA23 contig_86, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21732.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
transmembrane protein; K07018
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5538..5891)
|
Ferredoxin-like protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBF6_VARPE
ferredoxin-like protein
Ferredoxin-like protein {ECO:0000313|EMBL:ADU39756.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5901..7058)
|
Putative integral membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2L118_9BURK
Variovorax paradoxus strain MEDvA23 contig_69, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25360.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
vanz family protein
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(7070..7498)
|
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CUU1_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL78964.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K08973 putative membrane protein
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7866..8852
|
Delta-aminolevulinic acid dehydratase {ECO:0000256|RuleBase:RU000515}; EC=4.2.1.24 {ECO:0000256|RuleBase:RU000515};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hemB; delta-aminolevulinic acid dehydratase HemB (EC:4.2.1.24)
delta-aminolevulinic acid dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI0003660921
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8872..10038
|
magnesium transporter CorA n=1 Tax=Variovorax paradoxus RepID=UPI00037B2BA4
mg2 transporter protein cora family protein
Mg2 transporter protein CorA family protein {ECO:0000313|EMBL:ADU39760.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10126..10494)
|
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XIL9_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU52164.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10714..11040)
|
alpha/beta hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI00037DF6B6
CLR family protein
Uncharacterized protein {ECO:0000313|EMBL:ADU39762.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11158..12066
|
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2L123_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL78968.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12111..12794)
|
Dienelactone hydrolase-like enzyme n=1 Tax=Variovorax sp. CF313 RepID=J3CUU6_9BURK
Dienelactone hydrolase-like enzyme {ECO:0000313|EMBL:EJL78969.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(12847..13452)
|
2-hydroxychromene-2-carboxylate isomerase n=1 Tax=Variovorax sp. CF313 RepID=J2KFH8_9BURK
2-hydroxychromene-2-carboxylate isomerase {ECO:0000313|EMBL:EJL78970.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
dsba oxidoreductase
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13524..14270
|
Putative dehydrogenase/reductase n=1 Tax=Variovorax paradoxus B4 RepID=T1XI01_VARPD
short-chain dehydrogenase/reductase SDR
Putative dehydrogenase/reductase {ECO:0000313|EMBL:AGU52168.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14274..14927
|
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI000372A68F
multiple antibiotic resistance (marc)-like protein; K05595 multiple antibiotic resistance protein
UPF0056 inner membrane protein {ECO:0000256|RuleBase:RU362048}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14936..15409)
|
thymocyte nuclear protein 1 n=1 Tax=Variovorax paradoxus RepID=UPI000378BCC1
EVE domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EJL78973.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15417..16583)
|
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E68BC
extracellular ligand-binding receptor
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADU39769.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16618..18474)
|
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-forming long-chain acyl-CoA synthetase n=1 Tax=Variovorax sp. CF313 RepID=J2KFI5_9BURK
AMP-forming long-chain acyl-CoA synthetase {ECO:0000313|EMBL:EJL78975.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18483..19256)
|
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBH1_VARPE
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADU39771.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19525..20346)
|
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035E53A7
Variovorax paradoxus strain MEDvA23 contig_69, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25348.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative branched-chain amino acid ABC transporter, ATP-binding protein
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(20343..21419)
|
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000368FDD2
putative branched-chain amino acid ABC transporter, permease protein
Putative branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:AGU52175.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21427..22302)
|
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00037E3877
putative branched-chain amino acid ABC transporter, permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADU39774.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22317..23147)
|
AraC family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00035E26E6
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AGU52177.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23259..24200)
|
acetyl hydrolase n=1 Tax=Variovorax paradoxus RepID=UPI0003605176
alpha/beta hydrolase folD-3 domain-containing protein
Alpha/beta hydrolase fold-3 domain protein {ECO:0000313|EMBL:ADU39776.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24264..25466)
|
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacte
phosphoribosylglycinamide formyltransferase 2 (EC:4.1.1.21); K08289 phosphoribosylglycinamide formyltransferase 2 [EC:2.1.2.2]
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Variovorax sp. CF313 RepID=J2TK87_9BURK
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
25645..26493
|
hbd; 3-hydroxybutyryl-CoA dehydrogenase Hbd (EC:1.1.1.157)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI000379069B
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL78983.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
|
|
SCNpilot_cont_300_bf_scaffold_74_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26528..27343
|
Enoyl-CoA hydratase/isomerase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VBH9_VARPE
Variovorax paradoxus strain MEDvA23 contig_69, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25341.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
enoyL-CoA hydratase/isomerase
|