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SCNpilot_expt_1000_bf_scaffold_7933_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7933_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..834
DNA (834bp) protein (278aa)
Succinyl-CoA ligase subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRI5_9RHIZ rbh
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5); K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] rbh
SCNpilot_expt_1000_bf_scaffold_7933_curated_2
unknown

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comp(1063..1359)
DNA (297bp) protein (99aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7933_curated_3
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2670..2984)
DNA (315bp) protein (105aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_expt_1000_bf_scaffold_7933_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3340..3942
DNA (603bp) protein (201aa)
2-oxoglutarate dehydrogenase E1 component SucA {ECO:0000313|EMBL:EYR79707.1}; EC=1.2.4.2 {ECO:0000313|EMBL:EYR79707.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
MFS transporter n=1 Tax=Rhizobium meliloti RepID=UPI000379DDCC rbh
sucA; 2-oxoglutarate dehydrogenase E1 component (EC:1.2.4.2) rbh
SCNpilot_expt_1000_bf_scaffold_7933_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4367..5263
DNA (897bp) protein (299aa)
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXK9_9RHIZ rbh
Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex; EC=2.3.1.61;; 2-oxoglutarate dehydrogenase complex component E2 {ECO:0000256|RuleBase:RU361138}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sucB2; dihydrolipoamide succinyltransferase (EC:2.3.1.61); K00658 2-oxoglutarate dehydrogenase E2 component (dihydrolipoamide succinyltransferase) [EC:2.3.1.61] rbh
SCNpilot_expt_1000_bf_scaffold_7933_curated_6
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5339..5764
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3JAX4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EMG55721.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7933_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5797..6438
DNA (642bp) protein (214aa)
Amino acid efflux protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5G5_9RHIZ rbh
Amino acid efflux protein {ECO:0000313|EMBL:EYR79710.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lysine exporter protein rbh
SCNpilot_expt_1000_bf_scaffold_7933_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6442..6927
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWK5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79711.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7933_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6924..7676
DNA (753bp) protein (251aa)
Putative oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGH6_9RHIZ rbh
Putative oxidoreductase {ECO:0000313|EMBL:EYR79712.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ygfF; oxidoreductase YgfF (EC:1.-.-.-) rbh
SCNpilot_expt_1000_bf_scaffold_7933_curated_10
Arthrobacter aurescens, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

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comp(7873..8490)
DNA (618bp) protein (206aa)
IS1380 family transposase
IS1380 family transposase n=3 Tax=Bacteria RepID=A1RCW9_ARTAT
IS1380 family transposase {ECO:0000313|EMBL:ABM10583.1}; TaxID=290340 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter aurescens (strain TC1).;"
SCNpilot_expt_1000_bf_scaffold_7933_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8632..9078
DNA (447bp) protein (149aa)
Dihydrolipoyl dehydrogenase Lpd n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EXL4_9RHIZ
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lpdA; dihydrolipoamide dehydrogenase; K00382 dihydrolipoamide dehydrogenase [EC:1.8.1.4]
SCNpilot_expt_1000_bf_scaffold_7933_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9160..9648
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0U1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79714.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7933_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9652..10734)
DNA (1083bp) protein (361aa)
GumN family protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D5H1_9RHIZ rbh
GumN family protein {ECO:0000313|EMBL:EYR79715.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K09973 hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_7933_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10797..11732)
DNA (936bp) protein (312aa)
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tyrosine recombinase XerC n=1 Tax=Rhizobium giardinii RepID=UPI0003669F45 rbh
xerC; Putative tyrosine recombinase rbh
SCNpilot_expt_1000_bf_scaffold_7933_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11897..12814
DNA (918bp) protein (306aa)
Putative ATPase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVV1_9RHIZ rbh
Putative ATPase {ECO:0000313|EMBL:EYR79717.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
Displaying 15 items

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