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NECEvent2014_6_3_Clostridium_paraputrificum_29_53

NECEvent2014_6_3_Clostridium_30_53
In projects: NECEvent2014_6_3

Consensus taxonomy: Clostridium  →  Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Description

16S rRNA-based ID: 99% to Clostridium_paraputrificum

Displaying items 1-50 of 78 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_6_3_scaffold_829 176_003_scaffold_829
Species: human gut metagenome (100%)
1 2604 bp 51.23 583.18 9.10
NECEvent2014_6_3_scaffold_1223 176_003_scaffold_1223 7 2545 bp 44.24 409.10 48.29
NECEvent2014_6_3_scaffold_1377 176_003_scaffold_1377
Species: Clostridium botulinum (50%)
2 1366 bp 24.96 39.97 61.93
NECEvent2014_6_3_scaffold_619 176_003_scaffold_619
Genus: Clostridium (60%)
5 3884 bp 30.66 63.03 68.33
NECEvent2014_6_3_scaffold_258 176_003_scaffold_258
Order: Clostridiales (54.17%)
24 19986 bp 25.91 51.64 76.91
NECEvent2014_6_3_scaffold_287 176_003_scaffold_287
Genus: Clostridium (81.82%)
22 17077 bp 28.58 59.98 80.49
NECEvent2014_6_3_scaffold_351 176_003_scaffold_351
Genus: Clostridium (53.33%)
15 11380 bp 29.15 47.46 80.85
NECEvent2014_6_3_scaffold_263 176_003_scaffold_263
Genus: Clostridium (66.67%)
24 19575 bp 28.95 52.10 81.66
NECEvent2014_6_3_scaffold_364 176_003_scaffold_364
Genus: Clostridium (50%)
14 10568 bp 28.28 44.03 82.10
NECEvent2014_6_3_scaffold_261 176_003_scaffold_261
Genus: Clostridium (78.26%)
23 19834 bp 28.56 58.33 82.12
NECEvent2014_6_3_scaffold_366 176_003_scaffold_366
Genus: Clostridium (75%)
12 10202 bp 28.89 53.80 83.01
NECEvent2014_6_3_scaffold_173 176_003_scaffold_173
Genus: Clostridium (59.38%)
32 28847 bp 27.29 48.74 83.27
NECEvent2014_6_3_scaffold_470 176_003_scaffold_470
Genus: Clostridium (66.67%)
9 5950 bp 28.92 64.44 83.41
NECEvent2014_6_3_scaffold_171 176_003_scaffold_171
Genus: Clostridium (52.17%)
23 29088 bp 29.24 56.94 84.72
NECEvent2014_6_3_scaffold_109 176_003_scaffold_109
Genus: Clostridium (70.45%)
44 43504 bp 28.68 52.41 85.18
NECEvent2014_6_3_scaffold_128 176_003_scaffold_128
Genus: Clostridium (85.37%)
41 38804 bp 29.26 59.15 85.21
NECEvent2014_6_3_scaffold_292 176_003_scaffold_292
Order: Clostridiales (60%)
15 16818 bp 28.81 49.77 85.41
NECEvent2014_6_3_scaffold_64 176_003_scaffold_64
Genus: Clostridium (69.09%)
55 62588 bp 30.10 55.15 87.08
NECEvent2014_6_3_scaffold_123 176_003_scaffold_123
Order: Clostridiales (55.56%)
45 39809 bp 28.65 55.63 87.36
NECEvent2014_6_3_scaffold_124 176_003_scaffold_124
Genus: Clostridium (63.16%)
38 39617 bp 29.60 50.19 87.49
NECEvent2014_6_3_scaffold_105 176_003_scaffold_105
Genus: Clostridium (70.73%)
41 44969 bp 29.24 52.02 87.61
NECEvent2014_6_3_scaffold_270 176_003_scaffold_270
Genus: Clostridium (72.22%)
18 18623 bp 30.89 65.21 87.66
NECEvent2014_6_3_scaffold_244 176_003_scaffold_244
Genus: Clostridium (62.07%)
29 21019 bp 29.17 48.93 87.76
NECEvent2014_6_3_scaffold_15 176_003_scaffold_15
Genus: Clostridium (65.55%)
119 121959 bp 29.20 46.26 87.77
NECEvent2014_6_3_scaffold_265 176_003_scaffold_265
Genus: Clostridium (55.56%)
18 19106 bp 29.85 53.43 87.79
NECEvent2014_6_3_scaffold_116 176_003_scaffold_116
Genus: Clostridium (73.47%)
49 41760 bp 29.19 48.03 88.26
NECEvent2014_6_3_scaffold_16 176_003_scaffold_16
Genus: Clostridium (71%)
124 120925 bp 29.08 45.92 88.41
NECEvent2014_6_3_scaffold_325 176_003_scaffold_325
Genus: Clostridium (64.71%)
17 13688 bp 30.46 44.89 88.44
NECEvent2014_6_3_scaffold_60 176_003_scaffold_60
Genus: Clostridium (68.63%)
51 66544 bp 28.92 55.01 88.50
NECEvent2014_6_3_scaffold_224 176_003_scaffold_224
Genus: Clostridium (87.5%)
24 23352 bp 30.43 60.26 88.59
NECEvent2014_6_3_scaffold_179 176_003_scaffold_179
Genus: Clostridium (88.89%)
27 28587 bp 30.48 51.29 88.60
NECEvent2014_6_3_scaffold_137 176_003_scaffold_137
Genus: Clostridium (87.88%)
33 36093 bp 30.47 56.75 88.78
NECEvent2014_6_3_scaffold_108 176_003_scaffold_108
Genus: Clostridium (81.4%)
43 43998 bp 28.70 45.82 88.94
NECEvent2014_6_3_scaffold_201 176_003_scaffold_201
Genus: Clostridium (63.89%)
36 25753 bp 30.35 54.41 89.02
NECEvent2014_6_3_scaffold_241 176_003_scaffold_241
Genus: Clostridium (100%)
21 21609 bp 28.35 60.08 89.05
NECEvent2014_6_3_scaffold_13 176_003_scaffold_13
Genus: Clostridium (75.4%)
126 132153 bp 29.40 52.81 89.06
NECEvent2014_6_3_scaffold_181 176_003_scaffold_181
Genus: Clostridium (88.89%)
36 28349 bp 29.99 56.51 89.18
NECEvent2014_6_3_scaffold_75 176_003_scaffold_75
Genus: Clostridium (71.43%)
49 55279 bp 29.96 55.10 89.19
NECEvent2014_6_3_scaffold_178 176_003_scaffold_178
Genus: Clostridium (81.25%)
32 28671 bp 28.53 57.09 89.24
NECEvent2014_6_3_scaffold_29 176_003_scaffold_29
Genus: Clostridium (87.1%)
93 94761 bp 28.64 51.61 89.49
NECEvent2014_6_3_scaffold_316 176_003_scaffold_316
Genus: Clostridium (85.71%)
14 15753 bp 34.74 60.66 89.66
NECEvent2014_6_3_scaffold_379 176_003_scaffold_379
Genus: Clostridium (100%)
5 8963 bp 29.30 56.55 89.67
NECEvent2014_6_3_scaffold_14 176_003_scaffold_14
Genus: Clostridium (84.75%)
118 131215 bp 30.00 54.52 89.68
NECEvent2014_6_3_scaffold_94 176_003_scaffold_94
Genus: Clostridium (58.7%)
46 47780 bp 29.19 48.92 89.79
NECEvent2014_6_3_scaffold_12 176_003_scaffold_12
Genus: Clostridium (81.33%)
166 137769 bp 31.28 58.06 89.82
NECEvent2014_6_3_scaffold_33 176_003_scaffold_33
Genus: Clostridium (73.56%)
87 89424 bp 29.98 53.75 89.83
NECEvent2014_6_3_scaffold_22 176_003_scaffold_22
Genus: Clostridium (86.67%)
105 104114 bp 29.46 49.64 89.83
NECEvent2014_6_3_scaffold_37 176_003_scaffold_37
Genus: Clostridium (90.14%)
71 83678 bp 29.35 56.54 89.84
NECEvent2014_6_3_scaffold_69 176_003_scaffold_69
Genus: Clostridium (71.7%)
53 58957 bp 29.60 45.52 89.91
NECEvent2014_6_3_scaffold_85 176_003_scaffold_85
Genus: Clostridium (84.44%)
45 49985 bp 30.46 57.02 90.02
Displaying items 1-50 of 78 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.