ggKbase home page

SCNPILOT_CONT_500_P_Novosphingobium_63_111

SCNPILOT_CONT_500_P_Novosphingobium_63_128
In projects: SCNPILOT_CONT_500_P

Consensus taxonomy: Novosphingobium  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

curate

Displaying items 1-50 of 63 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_cont_500_p_scaffold_64889
Species: Novosphingobium nitrogenifigens (100%)
2 1908 bp 62.00 144.10 101.26
scnpilot_cont_500_p_scaffold_85612
Species: Novosphingobium nitrogenifigens (100%)
2 1064 bp 60.06 130.97 100.66
scnpilot_cont_500_p_scaffold_85598
Species: Novosphingobium nitrogenifigens (100%)
2 1064 bp 61.84 135.20 100.66
scnpilot_cont_500_p_scaffold_43402
Species: Novosphingobium sp. MD-1 (100%)
1 1657 bp 64.15 145.38 99.94
scnpilot_cont_500_p_scaffold_72552
Species: Novosphingobium nitrogenifigens (100%)
1 1189 bp 60.89 139.53 99.92
scnpilot_cont_500_p_scaffold_72521
Species: Novosphingobium nitrogenifigens (100%)
1 1189 bp 61.06 148.74 99.92
scnpilot_cont_500_p_scaffold_24989
Species: Novosphingobium nitrogenifigens (100%)
2 2333 bp 63.01 286.18 99.79
scnpilot_cont_500_p_scaffold_64866
Species: Novosphingobium nitrogenifigens (100%)
2 1934 bp 62.20 137.20 99.74
scnpilot_cont_500_p_scaffold_15708
Species: Novosphingobium nitrogenifigens (100%)
4 3807 bp 62.33 278.84 98.35
scnpilot_cont_500_p_scaffold_6568
Species: Novosphingobium nitrogenifigens (75%)
4 5989 bp 61.90 430.54 98.03
scnpilot_cont_500_p_scaffold_5333
Species: Novosphingobium nitrogenifigens (60%)
5 7211 bp 63.25 147.90 97.81
scnpilot_cont_500_p_scaffold_43399
Species: Novosphingobium sp. MD-1 (100%)
1 1657 bp 63.55 145.56 97.77
scnpilot_cont_500_p_scaffold_4416
Order: Sphingomonadales (66.67%)
6 8533 bp 57.00 143.13 97.04
scnpilot_cont_500_p_scaffold_38460
Species: Novosphingobium sp. MD-1 (100%)
1 1788 bp 64.82 153.94 96.81
scnpilot_cont_500_p_scaffold_4196
Order: Sphingomonadales (66.67%)
9 10769 bp 57.02 146.53 96.78
scnpilot_cont_500_p_scaffold_356
Order: Sphingomonadales (93.55%)
31 46169 bp 63.88 125.10 96.03
scnpilot_cont_500_p_scaffold_29209
Species: Novosphingobium nitrogenifigens (66.67%)
3 2120 bp 57.74 185.45 95.94
scnpilot_cont_500_p_scaffold_41
Order: Sphingomonadales (69.64%)
168 204887 bp 63.49 146.70 94.62
scnpilot_cont_500_p_scaffold_8
Order: Sphingomonadales (79.35%)
586 755139 bp 63.80 153.65 93.77
scnpilot_cont_500_p_scaffold_198
Genus: Novosphingobium (73.02%)
63 67012 bp 63.74 120.85 93.29
scnpilot_cont_500_p_scaffold_753
Order: Sphingomonadales (63.89%)
36 29030 bp 57.22 151.40 93.00
scnpilot_cont_500_p_scaffold_13
Order: Sphingomonadales (77.44%)
328 371280 bp 63.96 138.08 92.90
scnpilot_cont_500_p_scaffold_3871
Class: Alphaproteobacteria (50%)
8 9530 bp 62.58 146.54 92.74
scnpilot_cont_500_p_scaffold_3
Genus: Novosphingobium (62.5%)
576 597217 bp 63.30 112.16 92.16
scnpilot_cont_500_p_scaffold_32
Genus: Novosphingobium (56.28%)
215 235453 bp 63.88 126.71 91.74
scnpilot_cont_500_p_scaffold_681
Genus: Novosphingobium (85.71%)
28 30786 bp 63.82 123.47 91.72
scnpilot_cont_500_p_scaffold_2959
Species: Sphingobium yanoikuyae (50%)
10 11781 bp 60.47 143.75 91.67
scnpilot_cont_500_p_scaffold_8167
Species: Novosphingobium nitrogenifigens (80%)
5 4997 bp 62.86 150.39 91.62
scnpilot_cont_500_p_scaffold_7878
Species: Novosphingobium nitrogenifigens (80%)
5 5154 bp 62.90 144.30 91.39
scnpilot_cont_500_p_scaffold_0
Genus: Novosphingobium (65.21%)
776 865864 bp 63.71 121.47 90.94
scnpilot_cont_500_p_scaffold_37
Genus: Novosphingobium (64.44%)
180 223846 bp 63.80 110.88 90.64
scnpilot_cont_500_p_scaffold_57
Genus: Novosphingobium (65.36%)
153 172188 bp 63.62 103.35 90.62
scnpilot_cont_500_p_scaffold_10
Genus: Novosphingobium (56.54%)
405 467239 bp 63.47 107.45 90.56
scnpilot_cont_500_p_scaffold_624
Order: Sphingomonadales (65.91%)
44 32395 bp 63.15 132.39 90.46
scnpilot_cont_500_p_scaffold_5294
Species: Novosphingobium nitrogenifigens (64.29%)
14 7276 bp 62.75 152.47 90.38
scnpilot_cont_500_p_scaffold_7624
Species: Novosphingobium nitrogenifigens (75%)
8 8654 bp 67.40 541.41 90.20
scnpilot_cont_500_p_scaffold_18
Genus: Novosphingobium (70.99%)
293 302037 bp 63.39 103.26 90.10
scnpilot_cont_500_p_scaffold_1491
Order: Sphingomonadales (89.66%)
29 23350 bp 58.48 150.91 90.05
scnpilot_cont_500_p_scaffold_62
Genus: Novosphingobium (65.99%)
147 159816 bp 63.14 117.95 89.80
scnpilot_cont_500_p_scaffold_433
Genus: Novosphingobium (73.08%)
52 50618 bp 62.85 130.25 89.71
scnpilot_cont_500_p_scaffold_545
Order: Sphingomonadales (58.82%)
68 76633 bp 61.16 146.79 89.70
scnpilot_cont_500_p_scaffold_49891
Species: Shinella sp. DD12 (50%)
2 1515 bp 57.62 135.35 89.51
scnpilot_cont_500_p_scaffold_4983
Class: Alphaproteobacteria (80%)
10 7655 bp 61.15 148.28 89.47
scnpilot_cont_500_p_scaffold_48
Order: Sphingomonadales (89.47%)
171 199919 bp 62.27 128.47 88.91
scnpilot_cont_500_p_scaffold_1890
Order: Sphingomonadales (88.24%)
17 15852 bp 59.30 143.60 88.89
scnpilot_cont_500_p_scaffold_1224
Genus: Novosphingobium (76.19%)
21 21440 bp 61.01 150.54 88.88
scnpilot_cont_500_p_scaffold_176
Genus: Novosphingobium (61.54%)
65 74723 bp 62.68 133.77 88.86
scnpilot_cont_500_p_scaffold_667
Order: Sphingomonadales (73.33%)
30 31128 bp 62.87 123.67 88.18
scnpilot_cont_500_p_scaffold_494
Order: Sphingomonadales (52.27%)
44 37172 bp 62.46 127.69 87.79
scnpilot_cont_500_p_scaffold_120
Genus: Novosphingobium (59.14%)
93 98063 bp 62.28 138.82 87.76
Displaying items 1-50 of 63 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.