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SCNPILOT_EXPT_750_BF_Sphingobacteriia_40_10

SCNPILOT_EXPT_750_BF_Sphingobacteriales_40_10
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 10.05 Longest contig: 339.57 Kbp Bin length: 6.22 Mbp GC content: 40.06 %
Contigs count: 114 Features count: 5311 rRNAs count: 0 tRNAs count: 53

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Displaying items 51-100 of 114 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_316
Order: Sphingobacteriales (58.82%)
85 105923 bp 39.86 10.39 88.26
scnpilot_expt_750_bf_scaffold_7474
Phylum: Bacteroidetes (75%)
4 2960 bp 37.20 10.30 88.28
scnpilot_expt_750_bf_scaffold_443
Order: Sphingobacteriales (51.67%)
60 77530 bp 41.07 9.79 88.35
scnpilot_expt_750_bf_scaffold_781
Order: Sphingobacteriales (73.33%)
30 38410 bp 39.96 8.90 88.36
scnpilot_expt_750_bf_scaffold_456
Order: Sphingobacteriales (53.2%)
250 293031 bp 40.75 9.60 88.41
scnpilot_expt_750_bf_scaffold_10263
Order: Sphingobacteriales (66.67%)
3 2378 bp 41.80 9.04 88.44
scnpilot_expt_750_bf_scaffold_300
Phylum: Bacteroidetes (74.63%)
67 87673 bp 39.76 9.93 88.46
scnpilot_expt_750_bf_scaffold_422
Phylum: Bacteroidetes (78.05%)
41 54598 bp 39.28 8.66 88.48
scnpilot_expt_750_bf_scaffold_488
Order: Sphingobacteriales (55.1%)
49 60587 bp 41.31 8.67 88.50
scnpilot_expt_750_bf_scaffold_5826
Phylum: Bacteroidetes (60%)
5 3502 bp 39.43 6.71 88.55
scnpilot_expt_750_bf_scaffold_360
Order: Sphingobacteriales (68.48%)
257 311943 bp 40.20 10.73 88.60
scnpilot_expt_750_bf_scaffold_869
Domain: Bacteria (86.67%)
15 17386 bp 39.64 11.45 88.62
scnpilot_expt_750_bf_scaffold_281
Phylum: Bacteroidetes (72.22%)
108 122983 bp 40.40 9.26 88.79
scnpilot_expt_750_bf_scaffold_649
Phylum: Bacteroidetes (80.85%)
47 44398 bp 39.80 9.56 88.86
scnpilot_expt_750_bf_scaffold_381
Order: Sphingobacteriales (65.48%)
84 94081 bp 39.40 8.39 88.91
scnpilot_expt_750_bf_scaffold_179
Order: Sphingobacteriales (61.83%)
131 142472 bp 39.89 10.30 88.94
scnpilot_expt_750_bf_scaffold_2331
Order: Sphingobacteriales (100%)
5 6592 bp 41.16 8.72 88.97
scnpilot_expt_750_bf_scaffold_586
Order: Sphingobacteriales (55.26%)
76 70509 bp 40.77 11.35 89.01
scnpilot_expt_750_bf_scaffold_1389
Order: Flavobacteriales (60.53%)
38 36861 bp 40.53 10.56 89.07
scnpilot_expt_750_bf_scaffold_595
Order: Sphingobacteriales (64.29%)
28 33297 bp 40.93 9.72 89.09
scnpilot_expt_750_bf_scaffold_309
Phylum: Bacteroidetes (83.33%)
102 110797 bp 40.36 10.62 89.12
scnpilot_expt_750_bf_scaffold_52
Order: Sphingobacteriales (67.76%)
214 286213 bp 40.40 11.00 89.17
scnpilot_expt_750_bf_scaffold_328
Order: Sphingobacteriales (54.55%)
121 153910 bp 39.67 10.72 89.49
scnpilot_expt_750_bf_scaffold_764
Order: Cytophagales (50%)
30 32585 bp 38.96 10.76 89.56
scnpilot_expt_750_bf_scaffold_11278
Species: Flavobacterium johnsoniae (50%)
2 2227 bp 40.59 7.18 89.58
scnpilot_expt_750_bf_scaffold_706
Order: Sphingobacteriales (59.62%)
52 57880 bp 41.50 10.09 89.64
scnpilot_expt_750_bf_scaffold_202
Order: Sphingobacteriales (60.24%)
254 339573 bp 40.16 10.28 89.65
scnpilot_expt_750_bf_scaffold_1163
Order: Sphingobacteriales (92.31%)
13 11915 bp 38.32 9.40 89.74
scnpilot_expt_750_bf_scaffold_65
Order: Sphingobacteriales (65.92%)
223 265134 bp 39.86 10.22 89.89
scnpilot_expt_750_bf_scaffold_9458
Order: Bacteroidales (50%)
4 3017 bp 38.55 11.77 89.89
scnpilot_expt_750_bf_scaffold_473
Phylum: Bacteroidetes (69.35%)
124 129867 bp 38.92 9.18 89.97
scnpilot_expt_750_bf_scaffold_374
Order: Sphingobacteriales (56.36%)
110 145101 bp 40.85 11.41 89.97
scnpilot_expt_750_bf_scaffold_20516
Species: Cardinium endosymbiont of Bemisia tabaci (100%)
1 1473 bp 43.65 9.84 90.02
scnpilot_expt_750_bf_scaffold_658
Order: Sphingobacteriales (57.69%)
26 28887 bp 40.44 10.45 90.03
scnpilot_expt_750_bf_scaffold_858
Order: Sphingobacteriales (62.75%)
51 60316 bp 40.91 10.77 90.11
scnpilot_expt_750_bf_scaffold_433
Order: Sphingobacteriales (69.81%)
106 125275 bp 39.88 9.69 90.14
scnpilot_expt_750_bf_scaffold_31895
Species: Elizabethkingia meningoseptica (50%)
2 1833 bp 40.04 8.59 90.18
scnpilot_expt_750_bf_scaffold_963
Order: Sphingobacteriales (61.54%)
13 17775 bp 39.71 9.58 90.36
scnpilot_expt_750_bf_scaffold_2881
Species: Elizabethkingia miricola (60%)
10 10195 bp 40.13 7.63 90.43
scnpilot_expt_750_bf_scaffold_503
Phylum: Bacteroidetes (60.61%)
66 83342 bp 38.57 9.73 90.44
scnpilot_expt_750_bf_scaffold_9928
Order: Sphingobacteriales (60%)
5 3739 bp 40.01 10.43 90.59
scnpilot_expt_750_bf_scaffold_519
Order: Sphingobacteriales (78.72%)
47 61143 bp 40.77 9.99 90.82
scnpilot_expt_750_bf_scaffold_654
Phylum: Bacteroidetes (69.57%)
23 29048 bp 41.49 11.12 91.00
scnpilot_expt_750_bf_scaffold_183
Order: Sphingobacteriales (61.15%)
139 175426 bp 40.18 11.03 91.12
scnpilot_expt_750_bf_scaffold_20663
Genus: Sphingobacterium (80%)
5 2961 bp 37.39 8.19 91.29
scnpilot_expt_750_bf_scaffold_423
Order: Sphingobacteriales (73.81%)
42 54471 bp 41.03 10.19 91.60
scnpilot_expt_750_bf_scaffold_5437
Order: Sphingobacteriales (50%)
4 4870 bp 40.23 8.32 91.79
scnpilot_expt_750_bf_scaffold_754
Order: Sphingobacteriales (52.63%)
19 21989 bp 41.51 10.62 91.90
scnpilot_expt_750_bf_scaffold_5629
Genus: Sphingobacterium (54.55%)
11 6326 bp 41.08 6.56 92.10
scnpilot_expt_750_bf_scaffold_1832
Genus: Sphingobacterium (54.55%)
11 7923 bp 38.77 6.82 92.58
Displaying items 51-100 of 114 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.