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solids_Actinobacteria_2

SCNPILOT_SOLID2_TRIM150_Actinobacteria_70_1
In projects: scnpilot_solids_dereplicated  |  SCNPILOT_SOLID2_TRIM150  |  SCN_92

Consensus taxonomy: Actinobacteria  →  Actinobacteria  →  Bacteria

Displaying items 1-50 of 86 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_2298_curated
Species: Nakamurella multipartita (80%)
10 10412 bp 73.49 1.00 97.01
scnpilot_solids2_trim150_scaffold_29272_curated
Species: Streptomyces sp. PCS3-D2 (50%)
2 995 bp 70.05 1.00 95.58
scnpilot_solids2_trim150_scaffold_1464_curated
Species: Nakamurella multipartita (100%)
11 15616 bp 72.83 1.00 94.81
scnpilot_solids2_trim150_scaffold_1002_curated
Class: Actinobacteria (72.22%)
18 21439 bp 71.05 1.00 94.78
scnpilot_solids2_trim150_scaffold_626_curated
Class: Actinobacteria (68.97%)
29 30392 bp 68.98 1.00 94.63
scnpilot_solids2_trim150_scaffold_2302_curated
Class: Actinobacteria (100%)
10 10438 bp 68.78 1.00 94.10
scnpilot_solids2_trim150_scaffold_338_curated
Species: Nakamurella multipartita (54.05%)
74 80023 bp 71.06 1.00 93.57
scnpilot_solids2_trim150_scaffold_227_curated
Class: Actinobacteria (67.92%)
53 68704 bp 68.51 1.00 93.42
scnpilot_solids2_trim150_scaffold_942_curated
Class: Actinobacteria (93.75%)
16 24762 bp 70.48 1.00 92.71
scnpilot_solids2_trim150_scaffold_142_curated
Class: Actinobacteria (57.65%)
85 102166 bp 68.33 1.00 92.52
scnpilot_solids2_trim150_scaffold_162_curated
Class: Actinobacteria (86.96%)
69 93953 bp 70.08 1.00 92.50
scnpilot_solids2_trim150_scaffold_449_curated
Order: Geodermatophilales (67.5%)
40 47972 bp 70.79 1.00 92.47
scnpilot_solids2_trim150_scaffold_732_curated
Class: Actinobacteria (87.5%)
24 28648 bp 69.99 1.00 92.33
scnpilot_solids2_trim150_scaffold_335_curated
Species: Nakamurella multipartita (59.09%)
44 49643 bp 71.19 1.00 92.20
scnpilot_solids2_trim150_scaffold_3789_curated
Class: Actinobacteria (50%)
8 6215 bp 71.13 1.00 92.15
scnpilot_solids2_trim150_scaffold_230_curated
Class: Actinobacteria (93.55%)
62 67284 bp 70.74 1.00 92.06
scnpilot_solids2_trim150_scaffold_11_curated
Class: Actinobacteria (81.53%)
249 293326 bp 69.77 1.00 91.89
scnpilot_solids2_trim150_scaffold_520_curated
Class: Actinobacteria (84.91%)
53 62069 bp 70.42 1.00 91.85
scnpilot_solids2_trim150_scaffold_676_curated
Class: Actinobacteria (57.78%)
45 48908 bp 68.38 1.00 91.68
scnpilot_solids2_trim150_scaffold_93_curated
Class: Actinobacteria (67.86%)
112 143913 bp 69.51 1.00 91.61
scnpilot_solids2_trim150_scaffold_1098_curated
Species: Nakamurella multipartita (70.59%)
17 19814 bp 71.07 1.00 91.51
scnpilot_solids2_trim150_scaffold_494_curated
Class: Actinobacteria (77.14%)
35 37031 bp 69.49 1.00 91.42
scnpilot_solids2_trim150_scaffold_185_curated
Class: Actinobacteria (79.11%)
158 182166 bp 70.23 1.00 91.41
scnpilot_solids2_trim150_scaffold_508_curated
Class: Actinobacteria (93.75%)
32 36382 bp 70.36 1.00 91.39
scnpilot_solids2_trim150_scaffold_70_curated
Class: Actinobacteria (86.61%)
127 151865 bp 70.25 1.00 91.33
scnpilot_solids2_trim150_scaffold_660_curated
Class: Actinobacteria (87.88%)
33 37640 bp 71.30 1.00 91.09
scnpilot_solids2_trim150_scaffold_149_curated
Class: Actinobacteria (69.33%)
75 99168 bp 69.69 1.00 91.08
scnpilot_solids2_trim150_scaffold_224_curated
Class: Actinobacteria (74%)
50 69388 bp 69.75 1.00 91.07
scnpilot_solids2_trim150_scaffold_16_curated
Class: Actinobacteria (72.17%)
230 260630 bp 68.53 1.00 90.93
scnpilot_solids2_trim150_scaffold_1768_curated
Class: Actinobacteria (77.78%)
18 25723 bp 70.31 1.00 90.91
scnpilot_solids2_trim150_scaffold_239_curated
Class: Actinobacteria (63.16%)
57 64375 bp 69.00 1.00 90.90
scnpilot_solids2_trim150_scaffold_163_curated
Class: Actinobacteria (84.15%)
82 93121 bp 70.42 1.00 90.79
scnpilot_solids2_trim150_scaffold_901_curated
Class: Actinobacteria (96.15%)
26 23321 bp 70.76 1.00 90.74
scnpilot_solids2_trim150_scaffold_360_curated
Class: Actinobacteria (79.59%)
49 47372 bp 70.66 1.00 90.62
scnpilot_solids2_trim150_scaffold_423_curated
Species: Nakamurella multipartita (64.79%)
71 77913 bp 72.09 1.00 90.55
scnpilot_solids2_trim150_scaffold_2228_curated
Species: Nakamurella multipartita (75%)
16 21546 bp 73.20 1.00 90.52
scnpilot_solids2_trim150_scaffold_319_curated
Species: Nakamurella multipartita (51.11%)
45 50557 bp 71.52 1.00 90.50
scnpilot_solids2_trim150_scaffold_326_curated
Class: Actinobacteria (85%)
40 50398 bp 66.99 1.00 90.36
scnpilot_solids2_trim150_scaffold_140_curated
Class: Actinobacteria (87.43%)
183 217445 bp 70.42 1.00 90.20
scnpilot_solids2_trim150_scaffold_5289_curated
Class: Actinobacteria (60%)
5 4274 bp 70.59 1.00 90.20
scnpilot_solids2_trim150_scaffold_1097_curated
Class: Actinobacteria (80.95%)
21 19475 bp 70.05 1.00 90.18
scnpilot_solids2_trim150_scaffold_1284_curated
Class: Actinobacteria (53.85%)
13 17444 bp 68.65 1.00 90.10
scnpilot_solids2_trim150_scaffold_650_curated
Class: Actinobacteria (70%)
20 29737 bp 68.26 1.00 90.07
scnpilot_solids2_trim150_scaffold_1517_curated
Class: Actinobacteria (76.47%)
17 15198 bp 71.79 1.00 90.03
scnpilot_solids2_trim150_scaffold_232_curated
Class: Actinobacteria (65.43%)
81 90626 bp 66.21 1.00 90.01
scnpilot_solids2_trim150_scaffold_259_curated
Species: Nakamurella multipartita (64.29%)
42 61214 bp 70.41 1.00 89.81
scnpilot_solids2_trim150_scaffold_2195_curated
Class: Actinobacteria (63.64%)
11 10907 bp 67.77 1.00 89.50
scnpilot_solids2_trim150_scaffold_805_curated
Order: Geodermatophilales (52.17%)
23 29533 bp 69.58 1.00 89.45
scnpilot_solids2_trim150_scaffold_95_curated
Species: Nakamurella multipartita (50%)
202 219672 bp 70.25 1.00 89.16
scnpilot_solids2_trim150_scaffold_3399_curated
Class: Actinobacteria (66.67%)
9 6980 bp 65.49 1.00 89.14
Displaying items 1-50 of 86 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.