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solids_Sphingobacteriales_4

SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_38_1
In projects: SCNPILOT_SOLID_1_TRIM150  |  scnpilot_solids_dereplicated  |  SCN_92

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK Manually curated genome
Original version: SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_39_21

Properties

Avg. coverage: 1.00 Longest contig: 293.46 Kbp Bin length: 4.67 Mbp GC content: 38.37 %
Contigs count: 70 Features count: 4025 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Displaying items 1-50 of 70 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_58_curated
Order: Sphingobacteriales (61.11%)
126 132547 bp 38.37 1.00 88.26
scnpilot_solids1_trim150_scaffold_34747_curated
Species: Pedobacter heparinus (100%)
2 1170 bp 41.11 1.00 97.18
scnpilot_solids1_trim150_scaffold_13_curated
Order: Sphingobacteriales (61.78%)
225 260439 bp 38.31 1.00 90.06
scnpilot_solids1_trim150_scaffold_17398_curated
Order: Sphingobacteriales (66.67%)
3 1839 bp 42.74 1.00 92.33
scnpilot_solids1_trim150_scaffold_127_curated
Order: Sphingobacteriales (67.12%)
73 84605 bp 37.26 1.00 89.50
scnpilot_solids1_trim150_scaffold_1055_curated
Order: Sphingobacteriales (62.5%)
16 16876 bp 38.07 1.00 88.05
scnpilot_solids1_trim150_scaffold_70_curated
Order: Sphingobacteriales (50%)
172 188750 bp 38.41 1.00 88.28
scnpilot_solids1_trim150_scaffold_1387_curated
Order: Sphingobacteriales (77.78%)
18 13514 bp 38.74 1.00 85.16
scnpilot_solids1_trim150_scaffold_19_curated
Order: Sphingobacteriales (60.48%)
210 229747 bp 38.21 1.00 88.04
scnpilot_solids1_trim150_scaffold_3330_curated
Class: Flavobacteriia (75%)
8 6547 bp 43.93 1.00 90.73
scnpilot_solids1_trim150_scaffold_30275_curated
Species: Sphingobacterium sp. 21 (50%)
2 1302 bp 37.79 1.00 93.78
scnpilot_solids1_trim150_scaffold_434_curated
Phylum: Bacteroidetes (71.74%)
46 58358 bp 37.42 1.00 88.76
scnpilot_solids1_trim150_scaffold_450_curated
Order: Sphingobacteriales (55.56%)
27 34911 bp 38.55 1.00 93.24
scnpilot_solids1_trim150_scaffold_1256_curated
Phylum: Bacteroidetes (83.33%)
18 24283 bp 39.63 1.00 87.60
scnpilot_solids1_trim150_scaffold_824_curated
Order: Sphingobacteriales (57.14%)
21 20608 bp 38.06 1.00 89.41
scnpilot_solids1_trim150_scaffold_24022_curated
Order: Sphingobacteriales (66.67%)
3 2132 bp 38.51 1.00 67.40
scnpilot_solids1_trim150_scaffold_768_curated
Phylum: Bacteroidetes (56.52%)
46 42751 bp 40.09 1.00 81.56
scnpilot_solids1_trim150_scaffold_389_curated
Phylum: Bacteroidetes (88.89%)
27 39237 bp 39.67 1.00 89.49
scnpilot_solids1_trim150_scaffold_388_curated
Phylum: Bacteroidetes (78.95%)
38 39262 bp 38.76 1.00 89.90
scnpilot_solids1_trim150_scaffold_41098_curated
Species: Pedobacter heparinus (50%)
2 1028 bp 36.38 1.00 98.35
scnpilot_solids1_trim150_scaffold_479_curated
Order: Sphingobacteriales (60.78%)
51 65755 bp 38.29 1.00 85.71
scnpilot_solids1_trim150_scaffold_381_curated
Order: Sphingobacteriales (56.52%)
92 110156 bp 38.74 1.00 88.80
scnpilot_solids1_trim150_scaffold_380_curated
Phylum: Bacteroidetes (79.41%)
34 40197 bp 39.34 1.00 92.42
scnpilot_solids1_trim150_scaffold_369_curated
Order: Sphingobacteriales (57.14%)
35 45141 bp 38.57 1.00 78.40
scnpilot_solids1_trim150_scaffold_213_curated
Phylum: Bacteroidetes (89.47%)
38 59183 bp 40.15 1.00 90.09
scnpilot_solids1_trim150_scaffold_28525_curated
Species: Niabella soli (100%)
1 1336 bp 41.17 1.00 74.33
scnpilot_solids1_trim150_scaffold_237_curated
Phylum: Bacteroidetes (62.5%)
56 61788 bp 35.66 1.00 91.64
scnpilot_solids1_trim150_scaffold_42_curated
Phylum: Bacteroidetes (81.43%)
140 158146 bp 39.49 1.00 90.89
scnpilot_solids1_trim150_scaffold_45_curated
Order: Sphingobacteriales (56.62%)
136 153984 bp 38.42 1.00 89.14
scnpilot_solids1_trim150_scaffold_334_curated
Order: Sphingobacteriales (59.52%)
42 44137 bp 37.89 1.00 89.67
scnpilot_solids1_trim150_scaffold_353_curated
Order: Sphingobacteriales (63.16%)
38 42796 bp 39.57 1.00 89.44
scnpilot_solids1_trim150_scaffold_337_curated
Order: Sphingobacteriales (53.85%)
39 43997 bp 38.84 1.00 90.33
scnpilot_solids1_trim150_scaffold_136_curated
Phylum: Bacteroidetes (82.54%)
63 79210 bp 38.33 1.00 85.82
scnpilot_solids1_trim150_scaffold_1183_curated
Phylum: Bacteroidetes (71.43%)
14 15242 bp 36.16 1.00 87.29
scnpilot_solids1_trim150_scaffold_318_curated
Phylum: Bacteroidetes (73.91%)
46 45846 bp 37.59 1.00 87.10
scnpilot_solids1_trim150_scaffold_4488_curated
Order: Sphingobacteriales (50%)
6 5203 bp 37.71 1.00 90.18
scnpilot_solids1_trim150_scaffold_1172_curated
Phylum: Bacteroidetes (64.29%)
14 15311 bp 37.97 1.00 84.70
scnpilot_solids1_trim150_scaffold_25_curated
Order: Sphingobacteriales (60.12%)
173 207198 bp 37.52 1.00 88.79
scnpilot_solids1_trim150_scaffold_139_curated
Phylum: Bacteroidetes (73.33%)
90 128285 bp 38.66 1.00 90.26
scnpilot_solids1_trim150_scaffold_11763_curated
Order: Sphingobacteriales (75%)
4 3116 bp 38.09 1.00 77.31
scnpilot_solids1_trim150_scaffold_2705_curated
Order: Flavobacteriales (66.67%)
6 7778 bp 43.71 1.00 97.43
scnpilot_solids1_trim150_scaffold_61_curated
Order: Sphingobacteriales (53.81%)
197 252328 bp 38.29 1.00 89.67
scnpilot_solids1_trim150_scaffold_60_curated
Phylum: Bacteroidetes (78.38%)
111 126643 bp 37.70 1.00 90.64
scnpilot_solids1_trim150_scaffold_16260_curated
Species: Sphingobacterium sp. ML3W (50%)
4 1992 bp 39.66 1.00 96.99
scnpilot_solids1_trim150_scaffold_298_curated
Phylum: Bacteroidetes (91.89%)
37 48302 bp 38.68 1.00 83.18
scnpilot_solids1_trim150_scaffold_1037_curated
Order: Sphingobacteriales (50%)
18 17119 bp 37.10 1.00 84.26
scnpilot_solids1_trim150_scaffold_635_curated
Phylum: Bacteroidetes (95.65%)
23 25705 bp 37.55 1.00 90.05
scnpilot_solids1_trim150_scaffold_3586_curated
Order: Sphingobacteriales (83.33%)
6 6213 bp 38.81 1.00 78.85
scnpilot_solids1_trim150_scaffold_502_curated
Phylum: Bacteroidetes (81.58%)
38 45050 bp 38.64 1.00 91.23
scnpilot_solids1_trim150_scaffold_942_curated
Order: Sphingobacteriales (58.82%)
17 18583 bp 37.47 1.00 88.00
Displaying items 1-50 of 70 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.