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berkeley_reactor_200306_biofilm_scaffold_66949

Search features with annotation key words

Displaying items 1-30 of 121 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_66949_1
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..355
DNA (354bp) protein (118aa)
Uncharacterized protein n=2 Tax=Pseudomonas aeruginosa RepID=K1D9W8_PSEAI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EZO93235.1}; TaxID=1418240 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa BWH054.;"
berkeley_reactor_200306_biofilm_scaffold_66949_2
CG_Alphaprot_01, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(368..1861)
DNA (1494bp) protein (498aa)
AMP nucleosidase (EC:3.2.2.4)
AMP nucleosidase n=1 Tax=Micavibrio aeruginosavorus EPB RepID=M4VID0_9PROT
Tax=CG_Alphaprot_01
berkeley_reactor_200306_biofilm_scaffold_66949_3
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2017..2682
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A715_STAND
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH88389.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_66949_4
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2693..4099
DNA (1407bp) protein (469aa)
GTPase Der n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UL43_METS4
engA; GTP-binding protein EngA
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_66949_5
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4257..6344)
DNA (2088bp) protein (696aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
DNA/RNA helicase, superfamily I n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KQU8_MESAW
DNA/RNA helicase, superfamily I
berkeley_reactor_200306_biofilm_scaffold_66949_6
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6409..6915)
DNA (507bp) protein (169aa)
MarR family transcriptional regulator n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZEH2_9BRAD
MarR family transcriptional regulator
MarR family transcriptional regulator {ECO:0000313|EMBL:BAM92208.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
berkeley_reactor_200306_biofilm_scaffold_66949_7
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6975..7943
DNA (969bp) protein (323aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI0003813D53
Alcohol dehydrogenase {ECO:0000313|EMBL:KGM35279.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
zinc-binding alcohol dehydrogenase
berkeley_reactor_200306_biofilm_scaffold_66949_8
Coniosporium apollinis, Coniosporium, Chaetothyriales, Chaetothyriomycetidae, Ascomycota, Fungi

Not on your lists

comp(8205..9080)
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Coniosporium apollinis (strain CBS 100218) RepID=R7Z1R7_CONA1
Uncharacterized protein {ECO:0000313|EMBL:EON67989.1}; TaxID=1168221 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Coniosporium.;" source="Coniosporium apollinis (strain CBS 100218) (Rock-inhabiting black; yeast).;"
putative phytanoyl-CoA dioxygenase
berkeley_reactor_200306_biofilm_scaffold_66949_9
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9219..9833)
DNA (615bp) protein (205aa)
O-methyltransferase n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00037D096B
Putative O-methyltransferase {ECO:0000313|EMBL:EJK81299.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
methyltransferase
berkeley_reactor_200306_biofilm_scaffold_66949_10
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9859..10161)
DNA (303bp) protein (101aa)
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase n=1 Tax=Nitratireductor indicus C115 RepID=K2N567_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KEQ06681.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_66949_11
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10158..10667)
DNA (510bp) protein (170aa)
Transcriptional regulator, PadR family n=2 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DY3_STIAD
PadR family transcriptional regulator
Transcriptional regulator, PadR family {ECO:0000313|EMBL:EAU69926.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
berkeley_reactor_200306_biofilm_scaffold_66949_12
Mesorhizobium sp. L2C066B000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10934..11701
DNA (768bp) protein (256aa)
UPI0003CFA1FB related cluster n=1 Tax=unknown RepID=UPI0003CFA1FB
Uncharacterized protein {ECO:0000313|EMBL:ESZ29394.1}; TaxID=1287105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C066B000.;"
type 11 methyltransferase
berkeley_reactor_200306_biofilm_scaffold_66949_13
unknown

Not on your lists

comp(11785..16593)
DNA (4809bp) protein (1603aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_66949_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16978..17808
DNA (831bp) protein (277aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00035F2BF0
DNA ligase-like protein
Putative DNA ligase-like protein {ECO:0000313|EMBL:AFL51474.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
berkeley_reactor_200306_biofilm_scaffold_66949_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18157..18825)
DNA (669bp) protein (223aa)
Transcriptional regulator, TetR family n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AZA5_RHILS
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ACS54431.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
berkeley_reactor_200306_biofilm_scaffold_66949_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18907..19647
DNA (741bp) protein (247aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AZA6_RHILS
3-ketoacyl-ACP reductase
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:AHF82234.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
berkeley_reactor_200306_biofilm_scaffold_66949_trna_4
unknown

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comp(19791..19863)
DNA (73bp)
transferRNA Asn
berkeley_reactor_200306_biofilm_scaffold_66949_17
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20079..20330
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UZ45_9RHIZ
Msl1110 protein
Uncharacterized protein {ECO:0000313|EMBL:GAK71192.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
berkeley_reactor_200306_biofilm_scaffold_66949_18
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20320..22134)
DNA (1815bp) protein (605aa)
poly(3-hydroxyalkanoate) polymerase n=1 Tax=Pannonibacter phragmitetus RepID=UPI0003742FFE
poly(R)-hydroxyalkanoic acid synthase
Poly(R)-hydroxyalkanoic acid synthase, class I subfamily {ECO:0000313|EMBL:ADZ71085.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
berkeley_reactor_200306_biofilm_scaffold_66949_19
unknown

Not on your lists

22251..22604
DNA (354bp) protein (118aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_66949_20
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22823..24040
DNA (1218bp) protein (406aa)
aminotransferase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000308C711
Aminotransferase {ECO:0000313|EMBL:KFG68513.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
aminotransferase
berkeley_reactor_200306_biofilm_scaffold_66949_21
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24465..25787
DNA (1323bp) protein (441aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ERG1_METSB
berkeley_reactor_200306_biofilm_scaffold_66949_22
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25810..26808
DNA (999bp) protein (333aa)
Fructose-1,6-bisphosphatase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YY14_9RHIZ
Fructose-1,6-bisphosphatase {ECO:0000256|PIRNR:PIRNR004532}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
glpX; fructose 1,6-bisphosphatase II
berkeley_reactor_200306_biofilm_scaffold_66949_23
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26795..27586)
DNA (792bp) protein (264aa)
prephenate dehydrogenase (EC:1.3.1.12)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00031D3A6C
Prephenate dehydrogenase {ECO:0000313|EMBL:EHL98179.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
berkeley_reactor_200306_biofilm_scaffold_66949_24
bacterium YEK0313, Bacteria

Not on your lists

28182..29984
DNA (1803bp) protein (601aa)
Single-stranded-DNA-specific exonuclease RecJ n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQD4_AFIFE
Single-stranded-DNA-specific exonuclease RecJ {ECO:0000313|EMBL:CEJ13141.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
single-stranded-DNA-specific exonuclease RecJ
berkeley_reactor_200306_biofilm_scaffold_66949_25
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30191..31723
DNA (1533bp) protein (511aa)
ABC transporter related n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZGE2_GLUDA
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ACI52346.1}; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
berkeley_reactor_200306_biofilm_scaffold_66949_26
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31710..32729
DNA (1020bp) protein (340aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:ACI52347.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ACI52347.1};; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Monosaccharide-transporting ATPase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZGE3_GLUDA
berkeley_reactor_200306_biofilm_scaffold_66949_27
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32726..33757
DNA (1032bp) protein (344aa)
monosaccharide-transporting ATPase (EC:3.6.3.17)
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:ACI52348.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ACI52348.1};; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Monosaccharide-transporting ATPase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZGE4_GLUDA
berkeley_reactor_200306_biofilm_scaffold_66949_28
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33814..34821
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=B5ZGE5_GLUDA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI52349.1}; Flags: Precursor;; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
berkeley_reactor_200306_biofilm_scaffold_66949_29
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34920..35231
DNA (312bp) protein (104aa)
Antibiotic biosynthesis monooxygenase n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9H7R4_GLUDA
antibiotic biosynthesis monooxygenase
Antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:ACI52350.1}; Putative antibiotic biosynthesis monooxygenase {ECO:0000313|EMBL:CAP57674.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
Displaying items 1-30 of 121 in total

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