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SCNpilot_P_inoc_Myxococcales_68_7

In projects: SCNpilot_P_inoc

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 6.83 Longest contig: 295.41 Kbp Bin length: 11.84 Mbp GC content: 68.37 %
Contigs count: 421 Features count: 10148 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Displaying items 351-400 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_633
Order: Myxococcales (65.85%)
41 54830 bp 68.91 6.38 89.79
scnpilot_p_inoc_scaffold_1052
Class: Deltaproteobacteria (56.1%)
41 50984 bp 67.36 6.86 89.18
scnpilot_p_inoc_scaffold_689
Class: Deltaproteobacteria (56.1%)
41 49345 bp 69.16 6.46 89.65
scnpilot_p_inoc_scaffold_848
Order: Myxococcales (50%)
42 56197 bp 67.67 6.62 85.10
scnpilot_p_inoc_scaffold_632
Phylum: Proteobacteria (52.38%)
42 54835 bp 68.78 6.76 92.08
scnpilot_p_inoc_scaffold_910
Order: Myxococcales (52.38%)
42 47279 bp 69.34 5.96 91.37
scnpilot_p_inoc_scaffold_710
Order: Myxococcales (52.38%)
42 48081 bp 68.30 7.43 90.92
scnpilot_p_inoc_scaffold_762
Phylum: Proteobacteria (50%)
42 44013 bp 69.62 6.64 89.23
scnpilot_p_inoc_scaffold_636
Order: Myxococcales (62.79%)
43 54343 bp 68.72 6.45 90.17
scnpilot_p_inoc_scaffold_1044
Order: Myxococcales (60.47%)
43 44502 bp 68.88 6.97 89.53
scnpilot_p_inoc_scaffold_688
Order: Myxococcales (53.49%)
43 49423 bp 68.55 6.52 90.61
scnpilot_p_inoc_scaffold_754
Order: Myxococcales (51.16%)
43 45276 bp 68.85 6.70 85.85
scnpilot_p_inoc_scaffold_597
Order: Myxococcales (56.82%)
44 57596 bp 69.04 7.70 88.54
scnpilot_p_inoc_scaffold_714
Order: Myxococcales (52.27%)
44 58229 bp 68.48 7.26 87.85
scnpilot_p_inoc_scaffold_589
Order: Myxococcales (60%)
45 58538 bp 69.25 7.07 91.80
scnpilot_p_inoc_scaffold_711
Order: Myxococcales (57.78%)
45 47991 bp 68.50 7.56 88.40
scnpilot_p_inoc_scaffold_913
Order: Myxococcales (58.7%)
46 60157 bp 67.58 7.00 90.46
scnpilot_p_inoc_scaffold_733
Order: Myxococcales (56.52%)
46 45735 bp 70.00 5.94 90.21
scnpilot_p_inoc_scaffold_618
Class: Deltaproteobacteria (51.06%)
47 55579 bp 68.01 7.65 89.48
scnpilot_p_inoc_scaffold_744
Class: Deltaproteobacteria (53.19%)
47 44922 bp 68.08 7.03 85.89
scnpilot_p_inoc_scaffold_641
Order: Myxococcales (50%)
48 54071 bp 69.02 6.50 88.07
scnpilot_p_inoc_scaffold_578
Phylum: Proteobacteria (53.06%)
49 60101 bp 69.80 6.49 89.13
scnpilot_p_inoc_scaffold_599
Order: Myxococcales (52.94%)
51 57493 bp 68.39 7.14 88.76
scnpilot_p_inoc_scaffold_981
Order: Myxococcales (56.86%)
51 57993 bp 68.51 6.43 84.29
scnpilot_p_inoc_scaffold_550
Phylum: Proteobacteria (51.92%)
52 63519 bp 68.28 7.40 88.65
scnpilot_p_inoc_scaffold_845
Order: Myxococcales (73.08%)
52 65423 bp 69.16 6.89 90.43
scnpilot_p_inoc_scaffold_549
Order: Myxococcales (67.92%)
53 63852 bp 68.46 7.31 90.22
scnpilot_p_inoc_scaffold_566
Phylum: Proteobacteria (55.56%)
54 62009 bp 68.71 7.15 88.54
scnpilot_p_inoc_scaffold_592
Order: Myxococcales (53.7%)
54 58080 bp 69.18 6.56 88.00
scnpilot_p_inoc_scaffold_436
Order: Myxococcales (58.18%)
55 80436 bp 68.24 6.49 89.56
scnpilot_p_inoc_scaffold_875
Class: Deltaproteobacteria (50%)
56 57400 bp 69.35 6.03 87.92
scnpilot_p_inoc_scaffold_1325
Order: Myxococcales (63.16%)
57 65792 bp 68.35 6.97 90.47
scnpilot_p_inoc_scaffold_542
Order: Myxococcales (53.45%)
58 64897 bp 67.81 7.44 90.14
scnpilot_p_inoc_scaffold_580
Order: Myxococcales (55.17%)
58 59805 bp 67.82 6.77 89.18
scnpilot_p_inoc_scaffold_836
Order: Myxococcales (50%)
58 69249 bp 68.14 7.37 90.04
scnpilot_p_inoc_scaffold_685
Class: Deltaproteobacteria (53.45%)
58 65319 bp 68.67 6.70 89.25
scnpilot_p_inoc_scaffold_538
Order: Myxococcales (61.02%)
59 65447 bp 68.49 6.71 90.88
scnpilot_p_inoc_scaffold_494
Order: Myxococcales (52.54%)
59 72669 bp 67.83 6.22 90.42
scnpilot_p_inoc_scaffold_783
Order: Myxococcales (54.84%)
62 69381 bp 68.11 7.10 90.04
scnpilot_p_inoc_scaffold_553
Phylum: Proteobacteria (50%)
62 62910 bp 66.84 7.11 87.72
scnpilot_p_inoc_scaffold_533
Phylum: Proteobacteria (60.32%)
63 67108 bp 67.32 7.47 89.68
scnpilot_p_inoc_scaffold_664
Order: Myxococcales (58.73%)
63 66297 bp 68.92 6.19 86.56
scnpilot_p_inoc_scaffold_439
Order: Myxococcales (63.49%)
63 80209 bp 68.12 6.99 83.13
scnpilot_p_inoc_scaffold_516
Order: Myxococcales (64.06%)
64 68168 bp 69.00 6.78 92.89
scnpilot_p_inoc_scaffold_582
Order: Myxococcales (57.58%)
66 68788 bp 68.37 7.64 89.85
scnpilot_p_inoc_scaffold_484
Phylum: Proteobacteria (53.03%)
66 76759 bp 67.47 7.59 89.11
scnpilot_p_inoc_scaffold_509
Class: Deltaproteobacteria (51.52%)
66 88604 bp 68.46 6.74 88.69
scnpilot_p_inoc_scaffold_441
Order: Myxococcales (65.67%)
67 79742 bp 68.67 6.31 90.39
scnpilot_p_inoc_scaffold_452
Order: Myxococcales (64.18%)
67 78203 bp 68.81 6.34 86.83
scnpilot_p_inoc_scaffold_745
Order: Myxococcales (53.62%)
69 76633 bp 67.91 7.58 89.32
Displaying items 351-400 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.