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RTP_02272018_0_2um_Hydrogenophilales_62_27

In projects: RTP_02272018_0_2um  |  SOB_across_mines  |  SOB_across_mines

Consensus taxonomy: Hydrogenophilales  →  Betaproteobacteria  →  Proteobacteria  →  Bacteria

Taxonomy override: Betaproteobacteria

Displaying items 1-50 of 110 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
RTP_02272018_0_2um_scaffold_10679
Species: Thiobacillus denitrificans (100%)
3 2583 bp 62.80 55.34 102.44
RTP_02272018_0_2um_scaffold_8351
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 2043 bp 66.32 19.31 100.44
RTP_02272018_0_2um_scaffold_13342
Species: Thiobacillus denitrificans (100%)
2 1274 bp 63.58 53.10 100.08
RTP_02272018_0_2um_scaffold_10670
Species: Thiobacillus denitrificans (100%)
1 1596 bp 65.04 40.88 99.81
RTP_02272018_0_2um_scaffold_16935
Species: GWE1_Thiobacillus_62_9_curated (100%)
1 1005 bp 63.08 49.55 99.70
RTP_02272018_0_2um_scaffold_10412
Species: GWE1_Thiobacillus_62_9_curated (50%)
2 1629 bp 59.30 56.08 99.08
RTP_02272018_0_2um_scaffold_3524
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (60%)
5 5084 bp 63.10 24.02 99.08
RTP_02272018_0_2um_scaffold_7721
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 2220 bp 67.97 18.92 99.05
RTP_02272018_0_2um_scaffold_13727
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1239 bp 57.71 42.98 99.03
RTP_02272018_0_2um_scaffold_4663
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (60%)
5 3792 bp 65.37 44.26 97.63
RTP_02272018_0_2um_scaffold_8396
Species: GWE1_Thiobacillus_62_9_curated (100%)
2 2033 bp 60.75 24.27 97.25
RTP_02272018_0_2um_scaffold_7280
Order: Hydrogenophilales (66.67%)
3 2377 bp 58.06 26.19 96.80
RTP_02272018_0_2um_scaffold_1791
Order: Hydrogenophilales (80%)
10 10115 bp 63.55 26.00 96.29
RTP_02272018_0_2um_scaffold_1582
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
12 13895 bp 62.92 38.53 96.14
RTP_02272018_0_2um_scaffold_4186
Species: Thiobacillus denitrificans (50%)
4 4252 bp 58.73 22.65 96.03
RTP_02272018_0_2um_scaffold_1473
Order: Hydrogenophilales (61.54%)
13 12532 bp 62.33 24.59 95.78
RTP_02272018_0_2um_scaffold_579
Order: Hydrogenophilales (71.43%)
28 31153 bp 59.79 28.23 95.72
RTP_02272018_0_2um_scaffold_14923
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1138 bp 59.05 39.15 95.69
RTP_02272018_0_2um_scaffold_14965
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1135 bp 59.56 18.50 95.68
RTP_02272018_0_2um_scaffold_3127
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (55.56%)
9 5725 bp 57.94 22.61 95.11
RTP_02272018_0_2um_scaffold_1858
Species: Thiobacillus denitrificans (53.85%)
13 9674 bp 68.09 21.92 95.07
RTP_02272018_0_2um_scaffold_2178
Species: GWE1_Thiobacillus_62_9_curated (50%)
20 8362 bp 57.37 28.95 94.97
RTP_02272018_0_2um_scaffold_1285
Order: Hydrogenophilales (66.67%)
12 14627 bp 61.53 24.18 94.86
RTP_02272018_0_2um_scaffold_346
Order: Hydrogenophilales (100%)
54 48044 bp 63.20 31.64 94.77
RTP_02272018_0_2um_scaffold_2961
Order: Hydrogenophilales (100%)
6 6071 bp 61.13 25.05 94.68
RTP_02272018_0_2um_scaffold_3025
Species: GWE1_Thiobacillus_62_9_curated (50%)
4 5903 bp 59.16 22.29 94.53
RTP_02272018_0_2um_scaffold_3393
Order: Hydrogenophilales (100%)
5 5273 bp 60.67 23.78 94.50
RTP_02272018_0_2um_scaffold_12427
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1371 bp 59.66 40.59 94.31
RTP_02272018_0_2um_scaffold_11385
Species: GWE1_Thiobacillus_62_9_curated (100%)
4 1495 bp 63.21 46.76 94.11
RTP_02272018_0_2um_scaffold_479
Order: Hydrogenophilales (56.1%)
41 37054 bp 61.95 24.21 94.10
RTP_02272018_0_2um_scaffold_485
Order: Hydrogenophilales (80.56%)
36 36722 bp 61.71 29.21 93.88
RTP_02272018_0_2um_scaffold_2272
Order: Hydrogenophilales (70%)
10 8038 bp 63.11 27.08 93.83
RTP_02272018_0_2um_scaffold_3062
Order: Hydrogenophilales (85.71%)
7 5842 bp 65.70 23.24 93.72
RTP_02272018_0_2um_scaffold_426
Order: Hydrogenophilales (59.46%)
37 41845 bp 66.75 26.59 93.64
RTP_02272018_0_2um_scaffold_2063
Order: Hydrogenophilales (71.43%)
7 8775 bp 64.85 45.47 93.44
RTP_02272018_0_2um_scaffold_783
Order: Hydrogenophilales (90.91%)
22 23854 bp 63.87 32.60 93.14
RTP_02272018_0_2um_scaffold_1320
Order: Hydrogenophilales (93.75%)
16 14192 bp 64.15 25.03 93.06
RTP_02272018_0_2um_scaffold_180
Order: Hydrogenophilales (55.06%)
89 75218 bp 61.48 26.71 93.03
RTP_02272018_0_2um_scaffold_194
Order: Hydrogenophilales (74.68%)
79 71075 bp 62.11 25.88 92.87
RTP_02272018_0_2um_scaffold_383
Order: Hydrogenophilales (90.7%)
43 44066 bp 63.81 25.65 92.85
RTP_02272018_0_2um_scaffold_103
Order: Hydrogenophilales (82.83%)
99 104911 bp 62.44 25.55 92.84
RTP_02272018_0_2um_scaffold_1044
Order: Hydrogenophilales (73.68%)
19 17929 bp 63.90 24.20 92.70
RTP_02272018_0_2um_scaffold_366
Order: Hydrogenophilales (75.44%)
57 45338 bp 62.55 26.69 92.68
RTP_02272018_0_2um_scaffold_761
Order: Hydrogenophilales (75.86%)
29 24398 bp 61.66 26.10 92.61
RTP_02272018_0_2um_scaffold_10381
Species: RIFOXYA1_FULL_Hydrogenophilales_63_33_curated (50%)
2 1633 bp 59.46 23.97 92.59
RTP_02272018_0_2um_scaffold_2946
Species: Thiobacillus denitrificans (66.67%)
3 6127 bp 64.55 28.55 92.54
RTP_02272018_0_2um_scaffold_449
Order: Hydrogenophilales (88.24%)
34 38982 bp 62.31 25.36 92.50
RTP_02272018_0_2um_scaffold_978
Order: Hydrogenophilales (100%)
22 19271 bp 62.80 27.10 92.49
RTP_02272018_0_2um_scaffold_301
Order: Hydrogenophilales (59.57%)
47 52215 bp 62.18 25.50 92.40
RTP_02272018_0_2um_scaffold_4398
Species: RIFOXYD1_FULL_Hydrogenophilales_62_11_curated (50%)
8 4046 bp 62.09 49.35 92.17
Displaying items 1-50 of 110 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.