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SW_12_Halobacteriales_65_32

In projects: SW_12  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 31.60 Longest contig: 145.69 Kbp Bin length: 3.38 Mbp GC content: 64.76 %
Contigs count: 119 Features count: 3453 rRNAs count: 0 tRNAs count: 38

Genome completeness

near complete RP 32 / 55 MC: 4 BSCG 28 / 51 MC: 1 ASCG 37 / 38
Displaying items 1-50 of 119 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_12_scaffold_3187
Species: Halococcus saccharolyticus (66.67%)
3 3602 bp 63.99 31.26 78.29
sw_12_scaffold_3041
Genus: Halococcus (50%)
4 6018 bp 65.30 31.20 93.37
sw_12_scaffold_2253
Order: Halobacteriales (75%)
4 4350 bp 62.78 31.24 59.03
sw_12_scaffold_1596
Order: Halobacteriales (50%)
4 5221 bp 64.37 29.40 91.48
sw_12_scaffold_1976
Order: Halobacteriales (50%)
4 4665 bp 63.90 33.07 81.03
sw_12_scaffold_3049
Order: Halobacteriales (80%)
5 5459 bp 65.32 32.66 88.20
sw_12_scaffold_1927
Species: Halococcus saccharolyticus (60%)
5 4737 bp 65.42 33.08 89.11
sw_12_scaffold_1657
Class: Halobacteria (83.33%)
6 9734 bp 63.14 31.27 84.11
sw_12_scaffold_4089
Genus: Halococcus (66.67%)
6 4288 bp 64.65 27.59 86.82
sw_12_scaffold_1266
Class: Halobacteria (50%)
6 5856 bp 65.93 30.87 83.76
sw_12_scaffold_5495
Genus: Halococcus (66.67%)
6 4666 bp 62.45 33.37 71.30
sw_12_scaffold_1767
Species: Halococcus saccharolyticus (50%)
6 5384 bp 65.38 30.29 91.55
sw_12_scaffold_824
Class: Halobacteria (85.71%)
7 8233 bp 64.75 32.09 86.72
sw_12_scaffold_2451
Order: Halobacteriales (50%)
8 8317 bp 63.11 30.53 82.24
sw_12_scaffold_643
Order: Halobacteriales (62.5%)
8 8433 bp 63.58 31.29 74.18
sw_12_scaffold_6913
Order: Haloferacales (50%)
8 4287 bp 62.07 32.58 68.30
sw_12_scaffold_5780
Order: Natrialbales (62.5%)
8 6007 bp 62.08 33.17 79.91
sw_12_scaffold_1080
Order: Natrialbales (55.56%)
9 7617 bp 64.05 29.57 90.11
sw_12_scaffold_1159
Order: Halobacteriales (55.56%)
9 12144 bp 65.28 30.48 87.13
sw_12_scaffold_1788
Order: Halobacteriales (66.67%)
9 9929 bp 65.41 32.07 73.42
sw_12_scaffold_3047
Order: Halobacteriales (60%)
10 9596 bp 66.10 30.76 74.84
sw_12_scaffold_664
Order: Halobacteriales (60%)
10 9359 bp 65.28 32.79 82.99
sw_12_scaffold_596
Class: Halobacteria (60%)
10 8762 bp 64.39 30.34 85.32
sw_12_scaffold_537
Class: Halobacteria (60%)
10 9312 bp 61.16 27.57 60.05
sw_12_scaffold_402
Order: Haloferacales (60%)
10 11135 bp 65.70 33.90 82.93
sw_12_scaffold_449
Genus: Halococcus (50%)
10 13207 bp 64.03 30.32 80.55
sw_12_scaffold_1910
Class: Halobacteria (81.82%)
11 8906 bp 61.66 28.31 83.34
sw_12_scaffold_396
Class: Halobacteria (81.82%)
11 11220 bp 65.13 32.57 89.52
sw_12_scaffold_386
Genus: Halococcus (50%)
12 11395 bp 65.99 30.73 78.53
sw_12_scaffold_1264
Genus: Halococcus (58.33%)
12 11384 bp 64.93 28.71 92.63
sw_12_scaffold_563
Class: Halobacteria (50%)
12 12482 bp 63.03 29.85 83.52
sw_12_scaffold_403
Class: Halobacteria (83.33%)
12 11772 bp 65.86 30.45 93.76
sw_12_scaffold_1214
Class: Halobacteria (75%)
12 11367 bp 65.12 29.47 79.52
sw_12_scaffold_451
Genus: Halococcus (53.85%)
13 13630 bp 66.16 32.39 96.78
sw_12_scaffold_336
Order: Halobacteriales (57.14%)
14 12633 bp 66.54 33.10 83.64
sw_12_scaffold_440
Class: Halobacteria (64.29%)
14 14187 bp 62.04 29.91 83.40
sw_12_scaffold_470
Order: Halobacteriales (78.57%)
14 11538 bp 65.88 31.50 82.74
sw_12_scaffold_257
Class: Halobacteria (80%)
15 15574 bp 66.07 31.94 87.65
sw_12_scaffold_218
Order: Natrialbales (66.67%)
15 16689 bp 65.05 31.99 82.20
sw_12_scaffold_407
Order: Halobacteriales (56.25%)
16 14307 bp 62.01 29.19 78.25
sw_12_scaffold_323
Order: Natrialbales (56.25%)
16 17818 bp 64.27 30.24 86.05
sw_12_scaffold_676
Order: Halobacteriales (50%)
16 15009 bp 66.01 32.47 82.03
sw_12_scaffold_540
Class: Halobacteria (68.75%)
16 15851 bp 64.44 29.72 68.38
sw_12_scaffold_261
Class: Halobacteria (88.24%)
17 14420 bp 65.48 31.46 74.90
sw_12_scaffold_378
Order: Halobacteriales (64.71%)
17 11516 bp 64.56 33.47 83.13
sw_12_scaffold_217
Genus: Halococcus (50%)
18 18663 bp 66.03 32.94 85.54
sw_12_scaffold_264
Class: Halobacteria (77.78%)
18 14356 bp 64.28 31.32 85.09
sw_12_scaffold_280
Class: Halobacteria (95%)
20 25989 bp 65.42 31.30 85.86
sw_12_scaffold_180
Class: Halobacteria (75%)
20 21967 bp 65.49 31.96 85.75
sw_12_scaffold_82
Class: Halobacteria (71.43%)
21 26097 bp 63.00 30.11 83.81
Displaying items 1-50 of 119 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.