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SW_12_Halobacteriales_65_32

In projects: SW_12  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 31.60 Longest contig: 145.69 Kbp Bin length: 3.38 Mbp GC content: 64.76 %
Contigs count: 119 Features count: 3453 rRNAs count: 0 tRNAs count: 38

Genome completeness

near complete RP 32 / 55 MC: 4 BSCG 28 / 51 MC: 1 ASCG 37 / 38
Displaying items 1-50 of 119 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_12_scaffold_2253
Order: Halobacteriales (75%)
4 4350 bp 62.78 31.24 59.03
sw_12_scaffold_537
Class: Halobacteria (60%)
10 9312 bp 61.16 27.57 60.05
sw_12_scaffold_161
Order: Halobacteriales (75%)
24 20838 bp 61.06 30.90 66.43
sw_12_scaffold_6913
Order: Haloferacales (50%)
8 4287 bp 62.07 32.58 68.30
sw_12_scaffold_540
Class: Halobacteria (68.75%)
16 15851 bp 64.44 29.72 68.38
sw_12_scaffold_5495
Genus: Halococcus (66.67%)
6 4666 bp 62.45 33.37 71.30
sw_12_scaffold_305
Class: Halobacteria (72.73%)
22 22069 bp 61.75 28.59 72.65
sw_12_scaffold_1788
Order: Halobacteriales (66.67%)
9 9929 bp 65.41 32.07 73.42
sw_12_scaffold_643
Order: Halobacteriales (62.5%)
8 8433 bp 63.58 31.29 74.18
sw_12_scaffold_3047
Order: Halobacteriales (60%)
10 9596 bp 66.10 30.76 74.84
sw_12_scaffold_261
Class: Halobacteria (88.24%)
17 14420 bp 65.48 31.46 74.90
sw_12_scaffold_314
Order: Halobacteriales (60%)
35 32138 bp 64.86 31.98 77.89
sw_12_scaffold_79
Class: Halobacteria (70.37%)
27 26328 bp 63.47 31.35 78.02
sw_12_scaffold_407
Order: Halobacteriales (56.25%)
16 14307 bp 62.01 29.19 78.25
sw_12_scaffold_3187
Species: Halococcus saccharolyticus (66.67%)
3 3602 bp 63.99 31.26 78.29
sw_12_scaffold_386
Genus: Halococcus (50%)
12 11395 bp 65.99 30.73 78.53
sw_12_scaffold_836
Order: Halobacteriales (50%)
24 21028 bp 65.18 33.74 79.04
sw_12_scaffold_187
Class: Halobacteria (88.37%)
43 35811 bp 64.59 31.45 79.48
sw_12_scaffold_1214
Class: Halobacteria (75%)
12 11367 bp 65.12 29.47 79.52
sw_12_scaffold_299
Class: Halobacteria (88.57%)
35 32759 bp 63.29 31.13 79.87
sw_12_scaffold_122
Order: Halobacteriales (64.71%)
34 25650 bp 63.47 29.79 79.88
sw_12_scaffold_5780
Order: Natrialbales (62.5%)
8 6007 bp 62.08 33.17 79.91
sw_12_scaffold_367
Class: Halobacteria (86.96%)
23 24125 bp 64.40 28.88 80.31
sw_12_scaffold_256
Order: Halobacteriales (55.88%)
34 23306 bp 64.39 29.91 80.36
sw_12_scaffold_449
Genus: Halococcus (50%)
10 13207 bp 64.03 30.32 80.55
sw_12_scaffold_178
Class: Halobacteria (77.78%)
72 59120 bp 63.09 29.93 80.56
sw_12_scaffold_188
Class: Halobacteria (66.67%)
27 27674 bp 63.37 30.14 80.71
sw_12_scaffold_146
Order: Halobacteriales (61.9%)
21 20092 bp 65.49 32.42 80.90
sw_12_scaffold_1976
Order: Halobacteriales (50%)
4 4665 bp 63.90 33.07 81.03
sw_12_scaffold_39
Order: Halobacteriales (61.11%)
36 34490 bp 64.90 31.79 81.21
sw_12_scaffold_177
Class: Halobacteria (72.41%)
29 32386 bp 63.81 29.12 81.22
sw_12_scaffold_78
Order: Halobacteriales (51.85%)
27 27120 bp 64.54 31.91 81.32
sw_12_scaffold_216
Order: Halobacteriales (56.86%)
51 41964 bp 64.36 31.86 81.39
sw_12_scaffold_193
Order: Halobacteriales (63.64%)
22 24475 bp 65.22 31.58 81.48
sw_12_scaffold_162
Order: Halobacteriales (72%)
25 26179 bp 65.23 32.22 81.80
sw_12_scaffold_676
Order: Halobacteriales (50%)
16 15009 bp 66.01 32.47 82.03
sw_12_scaffold_142
Class: Halobacteria (68.09%)
47 40215 bp 64.82 29.44 82.04
sw_12_scaffold_221
Order: Halobacteriales (50%)
28 25717 bp 64.54 33.66 82.04
sw_12_scaffold_129
Genus: Halococcus (56.52%)
23 23299 bp 65.29 31.30 82.19
sw_12_scaffold_218
Order: Natrialbales (66.67%)
15 16689 bp 65.05 31.99 82.20
sw_12_scaffold_209
Class: Halobacteria (72%)
25 22081 bp 65.68 32.17 82.22
sw_12_scaffold_2451
Order: Halobacteriales (50%)
8 8317 bp 63.11 30.53 82.24
sw_12_scaffold_119
Order: Halobacteriales (56%)
25 22608 bp 64.65 31.84 82.34
sw_12_scaffold_59
Class: Halobacteria (77.89%)
95 83427 bp 64.89 29.99 82.37
sw_12_scaffold_121
Order: Halobacteriales (52.83%)
53 48271 bp 64.83 32.98 82.67
sw_12_scaffold_32
Order: Halobacteriales (55.1%)
49 48808 bp 65.65 33.61 82.71
sw_12_scaffold_91
Genus: Halococcus (57.38%)
61 57531 bp 64.72 32.50 82.73
sw_12_scaffold_470
Order: Halobacteriales (78.57%)
14 11538 bp 65.88 31.50 82.74
sw_12_scaffold_67
Order: Halobacteriales (58.33%)
120 122009 bp 64.93 31.99 82.75
sw_12_scaffold_402
Order: Haloferacales (60%)
10 11135 bp 65.70 33.90 82.93
Displaying items 1-50 of 119 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.