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SW_12_Halobacteriales_65_32

In projects: SW_12  |  diaphorachaeota  |  archaea_ggkbase

Consensus taxonomy: Halobacteriales  →  Halobacteria  →  Euryarchaeota  →  Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: SW_12_UNK

Properties

Avg. coverage: 31.60 Longest contig: 145.69 Kbp Bin length: 3.38 Mbp GC content: 64.76 %
Contigs count: 119 Features count: 3453 rRNAs count: 0 tRNAs count: 38

Genome completeness

near complete RP 32 / 55 MC: 4 BSCG 28 / 51 MC: 1 ASCG 37 / 38
Displaying items 1-50 of 119 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_12_scaffold_20
Order: Halobacteriales (54.93%)
71 77399 bp 64.64 34.09 83.07
sw_12_scaffold_168
Order: Halobacteriales (71.43%)
28 26306 bp 66.45 34.05 85.33
sw_12_scaffold_402
Order: Haloferacales (60%)
10 11135 bp 65.70 33.90 82.93
sw_12_scaffold_836
Order: Halobacteriales (50%)
24 21028 bp 65.18 33.74 79.04
sw_12_scaffold_63
Order: Halobacteriales (59.62%)
52 39751 bp 65.27 33.70 87.94
sw_12_scaffold_221
Order: Halobacteriales (50%)
28 25717 bp 64.54 33.66 82.04
sw_12_scaffold_32
Order: Halobacteriales (55.1%)
49 48808 bp 65.65 33.61 82.71
sw_12_scaffold_120
Order: Halobacteriales (56%)
50 42240 bp 64.28 33.47 83.20
sw_12_scaffold_378
Order: Halobacteriales (64.71%)
17 11516 bp 64.56 33.47 83.13
sw_12_scaffold_5495
Genus: Halococcus (66.67%)
6 4666 bp 62.45 33.37 71.30
sw_12_scaffold_107
Order: Halobacteriales (53.57%)
56 54789 bp 65.65 33.19 85.28
sw_12_scaffold_5780
Order: Natrialbales (62.5%)
8 6007 bp 62.08 33.17 79.91
sw_12_scaffold_336
Order: Halobacteriales (57.14%)
14 12633 bp 66.54 33.10 83.64
sw_12_scaffold_1927
Species: Halococcus saccharolyticus (60%)
5 4737 bp 65.42 33.08 89.11
sw_12_scaffold_1976
Order: Halobacteriales (50%)
4 4665 bp 63.90 33.07 81.03
sw_12_scaffold_95
Order: Halobacteriales (64.41%)
59 60481 bp 65.34 32.98 83.70
sw_12_scaffold_121
Order: Halobacteriales (52.83%)
53 48271 bp 64.83 32.98 82.67
sw_12_scaffold_46
Order: Halobacteriales (63.41%)
41 38137 bp 65.11 32.97 86.65
sw_12_scaffold_217
Genus: Halococcus (50%)
18 18663 bp 66.03 32.94 85.54
sw_12_scaffold_13
Order: Halobacteriales (67.12%)
73 77570 bp 65.80 32.80 85.53
sw_12_scaffold_133
Order: Halobacteriales (60.71%)
28 25776 bp 65.96 32.80 87.47
sw_12_scaffold_664
Order: Halobacteriales (60%)
10 9359 bp 65.28 32.79 82.99
sw_12_scaffold_47
Order: Halobacteriales (64.1%)
39 41302 bp 65.38 32.71 88.53
sw_12_scaffold_3049
Order: Halobacteriales (80%)
5 5459 bp 65.32 32.66 88.20
sw_12_scaffold_6913
Order: Haloferacales (50%)
8 4287 bp 62.07 32.58 68.30
sw_12_scaffold_396
Class: Halobacteria (81.82%)
11 11220 bp 65.13 32.57 89.52
sw_12_scaffold_91
Genus: Halococcus (57.38%)
61 57531 bp 64.72 32.50 82.73
sw_12_scaffold_676
Order: Halobacteriales (50%)
16 15009 bp 66.01 32.47 82.03
sw_12_scaffold_4
Order: Halobacteriales (58.54%)
82 89296 bp 65.83 32.45 87.06
sw_12_scaffold_68
Order: Halobacteriales (59.18%)
49 51621 bp 64.44 32.45 86.03
sw_12_scaffold_146
Order: Halobacteriales (61.9%)
21 20092 bp 65.49 32.42 80.90
sw_12_scaffold_451
Genus: Halococcus (53.85%)
13 13630 bp 66.16 32.39 96.78
sw_12_scaffold_0
Order: Halobacteriales (57.86%)
140 145690 bp 65.05 32.32 84.42
sw_12_scaffold_202
Class: Halobacteria (76.19%)
21 21593 bp 65.41 32.23 84.79
sw_12_scaffold_162
Order: Halobacteriales (72%)
25 26179 bp 65.23 32.22 81.80
sw_12_scaffold_135
Order: Halobacteriales (63.64%)
22 20866 bp 65.18 32.20 85.56
sw_12_scaffold_209
Class: Halobacteria (72%)
25 22081 bp 65.68 32.17 82.22
sw_12_scaffold_169
Class: Halobacteria (77.78%)
27 25239 bp 64.96 32.14 85.13
sw_12_scaffold_70
Order: Halobacteriales (60.87%)
69 70739 bp 64.93 32.11 83.13
sw_12_scaffold_824
Class: Halobacteria (85.71%)
7 8233 bp 64.75 32.09 86.72
sw_12_scaffold_443
Class: Halobacteria (69.57%)
23 24600 bp 65.22 32.08 84.68
sw_12_scaffold_401
Order: Halobacteriales (62.79%)
43 37551 bp 65.51 32.07 88.21
sw_12_scaffold_1788
Order: Halobacteriales (66.67%)
9 9929 bp 65.41 32.07 73.42
sw_12_scaffold_354
Order: Halobacteriales (59.09%)
22 23525 bp 65.14 32.04 84.22
sw_12_scaffold_147
Class: Halobacteria (88%)
25 26632 bp 64.52 32.02 83.78
sw_12_scaffold_218
Order: Natrialbales (66.67%)
15 16689 bp 65.05 31.99 82.20
sw_12_scaffold_67
Order: Halobacteriales (58.33%)
120 122009 bp 64.93 31.99 82.75
sw_12_scaffold_314
Order: Halobacteriales (60%)
35 32138 bp 64.86 31.98 77.89
sw_12_scaffold_180
Class: Halobacteria (75%)
20 21967 bp 65.49 31.96 85.75
sw_12_scaffold_257
Class: Halobacteria (80%)
15 15574 bp 66.07 31.94 87.65
Displaying items 1-50 of 119 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.