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anamox1_Sphingobacteriales_42_27_curated

anamox1_Sphingobacteriales_42_1
In projects: anamox1  |  LAC_year1  |  LAC_reactor_startup

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: anamox1_Sphingobacteriales_42_27 Manually curated genome
Original version: anamox1_Sphingobacteriales_42_27

Properties

Avg. coverage: 1.00 Longest contig: 154.97 Kbp Bin length: 3.49 Mbp GC content: 42.00 %
Contigs count: 95 Features count: 3068 rRNAs count: 1 tRNAs count: 41

Genome completeness

near complete RP 53 / 55 MC: 2 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Displaying items 1-50 of 95 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
anamox1_curated_scaffold_440
Order: Sphingobacteriales (64.75%)
139 151395 bp 41.99 1.00 91.38
anamox1_curated_scaffold_189
Order: Sphingobacteriales (72.99%)
137 154972 bp 41.97 1.00 91.57
anamox1_curated_scaffold_72
Order: Sphingobacteriales (69.23%)
130 142784 bp 41.61 1.00 90.74
anamox1_curated_scaffold_246
Order: Sphingobacteriales (63.56%)
118 137418 bp 42.14 1.00 89.74
anamox1_curated_scaffold_275
Order: Sphingobacteriales (51.33%)
113 123787 bp 41.51 1.00 89.85
anamox1_curated_scaffold_475
Order: Sphingobacteriales (50.44%)
113 130831 bp 40.85 1.00 89.27
anamox1_curated_scaffold_423
Order: Sphingobacteriales (66.02%)
103 118538 bp 42.83 1.00 91.11
anamox1_curated_scaffold_281
Order: Sphingobacteriales (69.15%)
94 100540 bp 41.82 1.00 90.13
anamox1_curated_scaffold_314
Order: Sphingobacteriales (65.17%)
89 97434 bp 42.33 1.00 92.50
anamox1_curated_scaffold_367
Order: Sphingobacteriales (59.26%)
81 82933 bp 42.00 1.00 90.02
anamox1_curated_scaffold_303
Order: Sphingobacteriales (75.64%)
78 93284 bp 42.42 1.00 90.12
anamox1_curated_scaffold_1212
Order: Sphingobacteriales (57.75%)
71 68457 bp 41.98 1.00 91.18
anamox1_curated_scaffold_216
Order: Sphingobacteriales (75%)
64 75478 bp 42.33 1.00 91.07
anamox1_curated_scaffold_1049
Order: Sphingobacteriales (77.36%)
53 54225 bp 42.58 1.00 90.77
anamox1_curated_scaffold_287
Order: Sphingobacteriales (75.47%)
53 64617 bp 42.08 1.00 89.86
anamox1_curated_scaffold_290
Order: Sphingobacteriales (76%)
50 73943 bp 43.08 1.00 92.84
anamox1_curated_scaffold_388
Order: Sphingobacteriales (56%)
50 70019 bp 42.84 1.00 92.04
anamox1_curated_scaffold_1209
Order: Sphingobacteriales (53.06%)
49 49888 bp 41.83 1.00 86.38
anamox1_curated_scaffold_438
Order: Sphingobacteriales (65.31%)
49 48058 bp 41.55 1.00 86.68
anamox1_curated_scaffold_1540
Order: Sphingobacteriales (61.7%)
47 54518 bp 41.54 1.00 89.35
anamox1_curated_scaffold_471
Order: Sphingobacteriales (60.87%)
46 49548 bp 42.33 1.00 92.12
anamox1_curated_scaffold_588
Order: Sphingobacteriales (55.81%)
43 41070 bp 41.98 1.00 90.55
anamox1_curated_scaffold_561
Order: Sphingobacteriales (70.73%)
41 45016 bp 42.82 1.00 90.99
anamox1_curated_scaffold_616
Order: Sphingobacteriales (67.5%)
40 42424 bp 42.84 1.00 91.68
anamox1_curated_scaffold_544
Phylum: Bacteroidetes (63.16%)
38 42013 bp 40.19 1.00 89.29
anamox1_curated_scaffold_1798
Order: Sphingobacteriales (83.33%)
36 37001 bp 41.27 1.00 90.50
anamox1_curated_scaffold_2168
Phylum: Bacteroidetes (72.22%)
36 32679 bp 42.11 1.00 86.35
anamox1_curated_scaffold_652
Phylum: Bacteroidetes (87.88%)
33 37498 bp 42.18 1.00 90.43
anamox1_curated_scaffold_852
Order: Sphingobacteriales (87.88%)
33 38712 bp 43.82 1.00 91.91
anamox1_curated_scaffold_1456
Order: Sphingobacteriales (56.25%)
32 43152 bp 43.03 1.00 92.78
anamox1_curated_scaffold_637
Order: Sphingobacteriales (56.25%)
32 38673 bp 42.77 1.00 91.58
anamox1_curated_scaffold_792
Order: Sphingobacteriales (60%)
30 33414 bp 41.53 1.00 90.32
anamox1_curated_scaffold_1205
Phylum: Bacteroidetes (79.31%)
29 37535 bp 42.16 1.00 89.82
anamox1_curated_scaffold_1558
Order: Sphingobacteriales (62.07%)
29 34262 bp 41.21 1.00 85.99
anamox1_curated_scaffold_2036
Order: Sphingobacteriales (58.62%)
29 29768 bp 42.19 1.00 85.80
anamox1_curated_scaffold_801
Order: Sphingobacteriales (55.17%)
29 31703 bp 42.32 1.00 88.50
anamox1_curated_scaffold_925
Order: Sphingobacteriales (55.17%)
29 34627 bp 40.52 1.00 92.45
anamox1_curated_scaffold_793
Order: Sphingobacteriales (71.43%)
28 35331 bp 41.02 1.00 93.85
anamox1_curated_scaffold_1079
Order: Sphingobacteriales (62.96%)
27 26762 bp 42.68 1.00 89.88
anamox1_curated_scaffold_3901
Phylum: Bacteroidetes (69.23%)
26 35445 bp 41.88 1.00 85.99
anamox1_curated_scaffold_935
Phylum: Bacteroidetes (65.38%)
26 28169 bp 39.20 1.00 92.13
anamox1_curated_scaffold_1737
Order: Sphingobacteriales (60%)
25 29962 bp 42.08 1.00 92.67
anamox1_curated_scaffold_1943
Order: Sphingobacteriales (58.33%)
24 25773 bp 43.06 1.00 87.93
anamox1_curated_scaffold_2611
Phylum: Bacteroidetes (83.33%)
24 28214 bp 40.40 1.00 87.69
anamox1_curated_scaffold_1597
Order: Sphingobacteriales (60.87%)
23 21562 bp 42.99 1.00 91.59
anamox1_curated_scaffold_1121
Order: Sphingobacteriales (63.64%)
22 25963 bp 42.44 1.00 91.38
anamox1_curated_scaffold_4146
Phylum: Bacteroidetes (68.18%)
22 23740 bp 41.26 1.00 85.56
anamox1_curated_scaffold_1271
Phylum: Bacteroidetes (85.71%)
21 22737 bp 43.73 1.00 89.05
anamox1_curated_scaffold_1572
Order: Sphingobacteriales (66.67%)
21 20543 bp 41.69 1.00 82.29
anamox1_curated_scaffold_1143
Order: Sphingobacteriales (65%)
20 26833 bp 42.61 1.00 90.44
Displaying items 1-50 of 95 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.