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ALUMROCK_MS4_Beggiotoa_37_524_curated

ALUMROCK_MS4_Thiotrichales_37_1
In projects: ALUMROCK_MS4  |  alumrock-genomes

Consensus taxonomy: Thiotrichales  →  Gammaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: ALUMROCK_MS4_Beggiotoa_37_524 Manually curated genome
Original version: ALUMROCK_MS4_Beggiotoa_37_524

Properties

Avg. coverage: 1.00 Longest contig: 99.60 Kbp Bin length: 3.91 Mbp GC content: 36.77 %
Contigs count: 288 Features count: 3554 rRNAs count: 1 tRNAs count: 44

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 2 ASCG 14 / 38 MC: 1
Displaying items 201-250 of 288 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
ar4r2_scaffold_1770
Species: Thioploca ingrica (50%)
12 13910 bp 38.39 1.00 88.84
ar4r2_scaffold_656
Order: Thiotrichales (86.67%)
15 28915 bp 38.11 1.00 88.86
ar4r2_scaffold_2667
Class: Gammaproteobacteria (61.54%)
13 10153 bp 35.72 1.00 88.88
ar4r2_scaffold_5166
Order: Thiotrichales (60%)
10 10974 bp 36.87 1.00 89.07
ar4r2_scaffold_316
Order: Thiotrichales (86.27%)
51 45268 bp 37.20 1.00 89.08
ar4r2_scaffold_2570
Order: Thiotrichales (63.64%)
11 10784 bp 37.97 1.00 89.13
ar4r2_scaffold_845
Order: Thiotrichales (78.79%)
33 35431 bp 36.82 1.00 89.13
ar4r2_scaffold_1914
Order: Thiotrichales (75%)
16 13342 bp 37.39 1.00 89.15
ar4r2_scaffold_1441
Species: Thioploca ingrica (50%)
10 16736 bp 34.57 1.00 89.21
ar4r2_scaffold_936
Order: Thiotrichales (71.43%)
21 23106 bp 36.30 1.00 89.30
ar4r2_scaffold_9891 11 7005 bp 37.76 1.00 89.38
ar4r2_scaffold_1984
Order: Thiotrichales (64%)
25 28062 bp 38.22 1.00 89.42
ar4r2_scaffold_3961
Phylum: Proteobacteria (88.89%)
9 13167 bp 39.16 1.00 89.47
ar4r2_scaffold_6473 7 4791 bp 36.86 1.00 89.48
ar4r2_scaffold_17783 5 3630 bp 36.58 1.00 89.59
ar4r2_scaffold_6209
Genus: Beggiatoa (60%)
5 5670 bp 35.70 1.00 89.68
ar4r2_scaffold_3097
Phylum: Proteobacteria (90.91%)
11 13617 bp 37.12 1.00 89.69
ar4r2_scaffold_995
Order: Thiotrichales (60%)
15 22081 bp 34.90 1.00 89.74
ar4r2_scaffold_1006
Order: Thiotrichales (78.95%)
19 21685 bp 36.24 1.00 89.77
ar4r2_scaffold_2976
Genus: Beggiatoa (53.85%)
13 9604 bp 36.05 1.00 89.87
ar4r2_scaffold_4369
Genus: Beggiatoa (60%)
5 6258 bp 37.81 1.00 89.88
ar4r2_scaffold_1040
Order: Thiotrichales (81.48%)
27 28163 bp 36.33 1.00 89.91
ar4r2_scaffold_1763
Order: Thiotrichales (62.5%)
16 17014 bp 37.63 1.00 89.91
ar4r2_scaffold_1736
Order: Thiotrichales (56.25%)
16 22872 bp 37.97 1.00 89.93
ar4r2_scaffold_524
Order: Thiotrichales (84.62%)
26 35798 bp 36.75 1.00 89.93
ar4r2_scaffold_7922
Genus: Beggiatoa (66.67%)
3 3466 bp 39.87 1.00 89.93
ar4r2_scaffold_10709
Genus: Beggiatoa (60%)
5 3122 bp 38.21 1.00 90.13
ar4r2_scaffold_2163
Order: Thiotrichales (50%)
6 12121 bp 37.84 1.00 90.29
ar4r2_scaffold_206
Order: Thiotrichales (68.85%)
61 88749 bp 36.88 1.00 90.29
ar4r2_scaffold_4281
Order: Thiotrichales (57.14%)
7 6368 bp 37.37 1.00 90.36
ar4r2_scaffold_3853
Order: Thiotrichales (66.67%)
12 11300 bp 37.32 1.00 90.58
ar4r2_scaffold_462
Order: Thiotrichales (80%)
35 43615 bp 36.96 1.00 90.65
ar4r2_scaffold_17412 3 3935 bp 35.98 1.00 90.65
ar4r2_scaffold_2229
Order: Thiotrichales (52.63%)
19 23407 bp 36.24 1.00 90.67
ar4r2_scaffold_14261
Order: Thiotrichales (60%)
5 4217 bp 38.77 1.00 90.70
ar4r2_scaffold_1195
Order: Thiotrichales (63.16%)
19 23010 bp 35.57 1.00 90.73
ar4r2_scaffold_4406
Species: Candidatus Thiomargarita nelsonii (60%)
10 12396 bp 37.54 1.00 90.78
ar4r2_scaffold_6633
Order: Thiotrichales (57.14%)
7 5813 bp 38.16 1.00 90.88
ar4r2_scaffold_2344
Order: Thiotrichales (72.73%)
11 11457 bp 35.22 1.00 91.02
ar4r2_scaffold_1844
Phylum: Proteobacteria (63.64%)
11 14041 bp 36.98 1.00 91.04
ar4r2_scaffold_2444
Order: Thiotrichales (58.33%)
12 10675 bp 36.32 1.00 91.17
ar4r2_scaffold_8493
Phylum: Proteobacteria (55.56%)
9 6519 bp 35.43 1.00 91.33
ar4r2_scaffold_8981
Class: Gammaproteobacteria (50%)
4 4572 bp 36.81 1.00 91.40
ar4r2_scaffold_2208 15 11839 bp 33.91 1.00 91.65
ar4r2_scaffold_17507
Species: Beggiatoa alba (50%)
2 2298 bp 34.29 1.00 91.78
ar4r2_scaffold_786
Class: Gammaproteobacteria (56.52%)
23 37558 bp 36.08 1.00 91.78
ar4r2_scaffold_2266
Order: Thiotrichales (50%)
8 11352 bp 35.74 1.00 91.89
ar4r2_scaffold_1400
Order: Thiotrichales (68.75%)
16 16699 bp 36.51 1.00 91.93
ar4r2_scaffold_8770
Order: Chromatiales (50%)
4 4952 bp 37.56 1.00 91.96
ar4r2_scaffold_7614
Species: Thioploca ingrica (66.67%)
3 4750 bp 39.05 1.00 92.02
Displaying items 201-250 of 288 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.