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NECEvent2014_3_5_Clostridium_ultunense-rel_31_38

NECEvent2014_3_5_Clostridiales_31_38
In projects: NECEvent2014_3_5

Consensus taxonomy: Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_3_5_UNK Curated version: NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_plum

Properties

Avg. coverage: 38.15 Longest contig: 215.07 Kbp Bin length: 4.04 Mbp GC content: 31.12 %
Contigs count: 93 Features count: 4020 rRNAs count: 1 tRNAs count: 49

Genome completeness

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 15 / 38 MC: 5
Displaying items 1-50 of 93 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_5_scaffold_13 173_003_scaffold_13
Order: Clostridiales (60%)
253 215073 bp 31.03 38.31 88.65
NECEvent2014_3_5_scaffold_11 173_003_scaffold_11
Species: Clostridium ultunense (74.12%)
228 208351 bp 29.63 34.26 91.18
NECEvent2014_3_5_scaffold_10 173_003_scaffold_10
Genus: Clostridium (59.69%)
196 214080 bp 31.39 38.50 90.40
NECEvent2014_3_5_scaffold_41 173_003_scaffold_41
Genus: Clostridium (54.26%)
129 122368 bp 30.20 34.90 88.28
NECEvent2014_3_5_scaffold_60 173_003_scaffold_60
Order: Clostridiales (80.36%)
112 101772 bp 30.84 38.90 89.42
NECEvent2014_3_5_scaffold_94 173_003_scaffold_94
Order: Clostridiales (87.5%)
112 143795 bp 31.94 39.31 89.32
NECEvent2014_3_5_scaffold_52 173_003_scaffold_52
Species: Clostridium ultunense (61.26%)
111 108153 bp 29.90 36.29 86.69
NECEvent2014_3_5_scaffold_51 173_003_scaffold_51
Order: Clostridiales (79.81%)
104 108291 bp 32.36 42.24 89.32
NECEvent2014_3_5_scaffold_53 173_003_scaffold_53
Order: Clostridiales (83%)
100 107986 bp 31.20 37.37 88.36
NECEvent2014_3_5_scaffold_104 173_003_scaffold_104
Order: Clostridiales (70.21%)
94 82235 bp 30.83 38.38 88.25
NECEvent2014_3_5_scaffold_63 173_003_scaffold_63
Species: Clostridium ultunense (58.06%)
93 99359 bp 29.26 33.59 91.58
NECEvent2014_3_5_scaffold_89 173_003_scaffold_89
Order: Clostridiales (60.44%)
91 77088 bp 29.82 34.65 85.40
NECEvent2014_3_5_scaffold_74 173_003_scaffold_74
Order: Clostridiales (76.74%)
86 89971 bp 32.14 36.78 88.28
NECEvent2014_3_5_scaffold_90 173_003_scaffold_90
Order: Clostridiales (74.42%)
86 75684 bp 31.89 37.52 84.79
NECEvent2014_3_5_scaffold_69 173_003_scaffold_69
Genus: Clostridium (50%)
84 93957 bp 30.45 40.75 87.49
NECEvent2014_3_5_scaffold_179 173_003_scaffold_179
Genus: Clostridium (57.89%)
76 83271 bp 30.62 37.76 89.03
NECEvent2014_3_5_scaffold_97 173_003_scaffold_97
Order: Clostridiales (85.33%)
75 73729 bp 31.65 37.00 82.88
NECEvent2014_3_5_scaffold_136 173_003_scaffold_136
Order: Clostridiales (75.34%)
73 100001 bp 32.34 38.95 91.17
NECEvent2014_3_5_scaffold_112 173_003_scaffold_112
Order: Clostridiales (78.26%)
69 67690 bp 31.00 42.65 89.48
NECEvent2014_3_5_scaffold_127 173_003_scaffold_127
Order: Clostridiales (82.61%)
69 69304 bp 32.03 40.54 88.32
NECEvent2014_3_5_scaffold_140 173_003_scaffold_140
Order: Clostridiales (73.53%)
68 69866 bp 30.16 42.77 84.08
NECEvent2014_3_5_scaffold_122 173_003_scaffold_122
Genus: Clostridium (61.54%)
65 64138 bp 30.06 35.06 89.08
NECEvent2014_3_5_scaffold_132 173_003_scaffold_132
Order: Clostridiales (67.69%)
65 59726 bp 30.93 37.40 83.55
NECEvent2014_3_5_scaffold_105 173_003_scaffold_105
Genus: Clostridium (57.81%)
64 70520 bp 30.43 35.31 86.86
NECEvent2014_3_5_scaffold_84 173_003_scaffold_84
Order: Clostridiales (87.3%)
63 82383 bp 32.44 38.61 90.91
NECEvent2014_3_5_scaffold_138 173_003_scaffold_138
Species: Clostridium ultunense (52.54%)
59 57578 bp 31.60 36.41 89.14
NECEvent2014_3_5_scaffold_142 173_003_scaffold_142
Genus: Clostridium (50%)
58 57103 bp 30.80 41.68 90.35
NECEvent2014_3_5_scaffold_203 173_003_scaffold_203
Order: Clostridiales (60%)
55 40852 bp 31.58 37.02 89.09
NECEvent2014_3_5_scaffold_130 173_003_scaffold_130
Genus: Clostridium (64.15%)
53 60616 bp 32.27 41.44 88.10
NECEvent2014_3_5_scaffold_129 173_003_scaffold_129
Order: Clostridiales (67.31%)
52 62088 bp 31.20 37.73 89.38
NECEvent2014_3_5_scaffold_158 173_003_scaffold_158
Species: Clostridium ultunense (74.51%)
51 51246 bp 31.44 33.84 93.66
NECEvent2014_3_5_scaffold_159 173_003_scaffold_159
Species: Clostridium ultunense (79.17%)
48 51164 bp 31.72 38.45 88.54
NECEvent2014_3_5_scaffold_173 173_003_scaffold_173
Order: Clostridiales (72.92%)
48 48725 bp 31.78 39.44 87.43
NECEvent2014_3_5_scaffold_154 173_003_scaffold_154
Genus: Clostridium (68.89%)
45 52573 bp 30.39 34.88 91.55
NECEvent2014_3_5_scaffold_197 173_003_scaffold_197
Order: Clostridiales (77.78%)
45 41745 bp 32.61 38.72 89.88
NECEvent2014_3_5_scaffold_164 173_003_scaffold_164
Order: Clostridiales (79.55%)
44 50659 bp 32.04 40.21 85.03
NECEvent2014_3_5_scaffold_204 173_003_scaffold_204
Order: Clostridiales (73.17%)
41 40802 bp 32.29 40.26 92.63
NECEvent2014_3_5_scaffold_258 173_003_scaffold_258
Order: Clostridiales (64.1%)
39 33091 bp 30.16 38.09 76.59
NECEvent2014_3_5_scaffold_357 173_003_scaffold_357
Order: Clostridiales (70.27%)
37 23348 bp 29.30 31.96 90.25
NECEvent2014_3_5_scaffold_400 173_003_scaffold_400
Species: Clostridium ultunense (77.78%)
36 20155 bp 33.52 39.34 88.33
NECEvent2014_3_5_scaffold_200 173_003_scaffold_200
Order: Clostridiales (69.44%)
36 41203 bp 30.19 39.29 85.27
NECEvent2014_3_5_scaffold_210 173_003_scaffold_210
Phylum: Firmicutes (62.86%)
35 39890 bp 29.99 37.65 84.59
NECEvent2014_3_5_scaffold_262 173_003_scaffold_262
Species: Clostridium ultunense (63.64%)
33 32514 bp 30.31 41.94 86.17
NECEvent2014_3_5_scaffold_242 173_003_scaffold_242
Order: Clostridiales (72.73%)
33 34913 bp 31.43 35.65 89.77
NECEvent2014_3_5_scaffold_340 173_003_scaffold_340
Order: Clostridiales (86.67%)
30 25145 bp 31.62 36.20 88.61
NECEvent2014_3_5_scaffold_278 173_003_scaffold_278
Order: Clostridiales (68.97%)
29 30960 bp 31.81 36.94 89.80
NECEvent2014_3_5_scaffold_339 173_003_scaffold_339
Species: Clostridium ultunense (60.71%)
28 25466 bp 31.88 33.86 85.54
NECEvent2014_3_5_scaffold_243 173_003_scaffold_243
Order: Clostridiales (53.57%)
28 34413 bp 28.11 38.00 82.87
NECEvent2014_3_5_scaffold_322 173_003_scaffold_322
Order: Clostridiales (62.96%)
27 27034 bp 29.79 38.72 69.47
NECEvent2014_3_5_scaffold_314 173_003_scaffold_314
Order: Clostridiales (88%)
25 27554 bp 30.86 34.81 86.26
Displaying items 1-50 of 93 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.