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SCNpilot_cont_300_bf_scaffold_417_curated

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_417_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..480)
DNA (480bp) protein (160aa)
Phosphonoacetate hydrolase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5Q0_VARPE
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17731.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
phosphonoacetate hydrolase
SCNpilot_cont_300_bf_scaffold_417_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(482..1210)
DNA (729bp) protein (243aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P9_VARPE
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ADU35946.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_417_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1366..2406
DNA (1041bp) protein (347aa)
2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P8_VARPE
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17733.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
2-aminoethylphosphonate ABC transporter 1-aminoethylphosphonate-binding protein component; K02012 iron(III) transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_417_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2585..3721
DNA (1137bp) protein (379aa)
2-aminoethylphosphonate ABC transporter ATP-binding protein component; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
2-aminoethylphosphonate ABC transport system, ATP-binding protein component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P7_VARPE
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17734.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_417_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3718..5451
DNA (1734bp) protein (578aa)
2-aminoethylphosphonate ABC transport system, permease protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P6_VARPE
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17735.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
2-aminoethylphosphonate ABC transporter permease; K02011 iron(III) transport system permease protein
SCNpilot_cont_300_bf_scaffold_417_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5493..6623
DNA (1131bp) protein (377aa)
2-aminoethylphosphonate/pyruvate transaminase; K03430 2-aminoethylphosphonate-pyruvate transaminase [EC:2.6.1.37]
2-aminoethylphosphonate--pyruvate transaminase {ECO:0000256|HAMAP-Rule:MF_01376, ECO:0000256|SAAS:SAAS00009569}; EC=2.6.1.37 {ECO:0000256|HAMAP-Rule:MF_01376, ECO:0000256|SAAS:SAAS00009569};; 2-aminoethylphosphonate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01376}; AEP transaminase {ECO:0000256|HAMAP-Rule:MF_01376}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
2-aminoethylphosphonate--pyruvate transaminase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P5_VARPE
SCNpilot_cont_300_bf_scaffold_417_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6703..8145
DNA (1443bp) protein (481aa)
Arabinose efflux permease family protein n=1 Tax=Variovorax sp. CF313 RepID=J2TKN4_9BURK
Arabinose efflux permease family protein {ECO:0000313|EMBL:EJL79107.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_417_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8153..9439)
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P3_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35940.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_417_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9601..10227
DNA (627bp) protein (209aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P2_VARPE
tripartite ATP-independent periplasmic transporter dctq component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:ADU35939.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_417_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10248..12086
DNA (1839bp) protein (613aa)
TRAP dicarboxylate transporter, DctM subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P1_VARPE
TRAP dicarboxylate transporter subunit DctM
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ADU35938.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_417_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12157..13239)
DNA (1083bp) protein (361aa)
Extracellular solute-binding protein, family 7 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5P0_VARPE
family 7 extracellular solute-binding protein
Extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:ADU35937.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_417_curated_12
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13460..14614
DNA (1155bp) protein (385aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036F9FCD
Leu/Ile/Val-binding periplasmic (Pbp) abc transporter protein; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_cont_300_bf_scaffold_417_curated_13
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14753..15634
DNA (882bp) protein (294aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI000372BDF6
High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_cont_300_bf_scaffold_417_curated_14
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15636..16499
DNA (864bp) protein (288aa)
amino acid ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003721C63
livM; Branched-chain amino acid transport system permease protein LivM
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_cont_300_bf_scaffold_417_curated_15
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16496..17299
DNA (804bp) protein (268aa)
ABC transporter n=1 Tax=Variovorax paradoxus RepID=UPI0003724DC2
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family {ECO:0000313|EMBL:ENZ76605.1}; TaxID=1264675 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii OR214.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_417_curated_16
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17296..18027
DNA (732bp) protein (244aa)
amino acid ABC transporter ATPase n=1 Tax=Variovorax paradoxus RepID=UPI00036003B0
amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
SCNpilot_cont_300_bf_scaffold_417_curated_17
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18169..20022)
DNA (1854bp) protein (618aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
deoxyxylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Variovorax paradoxus RepID=UPI00037E2D1D
SCNpilot_cont_300_bf_scaffold_417_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20045..20968)
DNA (924bp) protein (308aa)
polyprenyl synthetase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
polyprenyl synthetase n=1 Tax=Variovorax paradoxus RepID=UPI00037B6034
Geranylgeranyl pyrophosphate synthase {ECO:0000313|EMBL:EJL79100.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_417_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20965..21231)
DNA (267bp) protein (89aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
exodeoxyribonuclease vii, small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CV36_9BURK
SCNpilot_cont_300_bf_scaffold_417_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21460..22602
DNA (1143bp) protein (381aa)
Ring-hydroxylating dioxygenase, large terminal subunit n=1 Tax=Variovorax sp. CF313 RepID=J2L1I4_9BURK
Ring-hydroxylating dioxygenase, large terminal subunit {ECO:0000313|EMBL:EJL79098.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
rieske (2fe-2S) iron-sulfur domain
SCNpilot_cont_300_bf_scaffold_417_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22662..23594
DNA (933bp) protein (311aa)
Putative transmembrane protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CT93_VARPS
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17746.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
transmembrane protein
SCNpilot_cont_300_bf_scaffold_417_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23650..24558
DNA (909bp) protein (303aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
Rhodanese-related sulfurtransferase n=1 Tax=Variovorax sp. CF313 RepID=J2KVT2_9BURK
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:EJL77098.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_417_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24555..25133
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CRL8_9BURK
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17748.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC-type metal ion transport system, periplasmic component/surface adhesin
SCNpilot_cont_300_bf_scaffold_417_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25138..25884
DNA (747bp) protein (249aa)
methionine ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000376F276
Variovorax paradoxus strain MEDvA23 contig_119, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ17749.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ABC transporter; K02003 putative ABC transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_417_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25881..27143
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V5N1_VARPE
hypothetical protein; K02004 putative ABC transport system permease protein
Uncharacterized protein {ECO:0000313|EMBL:ADU35928.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_417_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27146..27787
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036FFB97
hypothetical protein; K09950 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18213.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_417_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27955..30003
DNA (2049bp) protein (683aa)
Small-conductance mechanosensitive channel n=1 Tax=Variovorax sp. CF313 RepID=J2KVT7_9BURK
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:EJL77103.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_417_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30059..31327)
DNA (1269bp) protein (423aa)
glutamate carboxypeptidase; K01295 glutamate carboxypeptidase [EC:3.4.17.11]
peptidase M20 n=1 Tax=Variovorax paradoxus RepID=UPI00035CCAC9
Peptidase M20 {ECO:0000313|EMBL:ACS18211.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_417_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31425..32153)
DNA (729bp) protein (243aa)
Transcriptional regulator, XRE family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CT85_VARPS
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ACS18210.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_417_curated_30
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32357..33511
DNA (1155bp) protein (385aa)
FAD-dependent oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI00036A0C2C
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJL77106.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
FAD-dependent oxidoreductase
Displaying items 1-30 of 47 in total

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