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SCNpilot_cont_300_bf_scaffold_180_curated

Search features with annotation key words

Displaying items 1-30 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_180_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..321)
DNA (321bp) protein (107aa)
Putative FAD-binding oxidoreductase n=1 Tax=Variovorax paradoxus B4 RepID=T1X9L3_VARPD
putative FAD-binding oxidoreductase
Putative FAD-binding oxidoreductase {ECO:0000313|EMBL:AGU48865.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_180_curated_2
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(318..740)
DNA (423bp) protein (141aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIJ4_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL72918.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

850..2061
DNA (1212bp) protein (404aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003785212
UPF0761 membrane protein RT97_10040 {ECO:0000256|HAMAP-Rule:MF_00672}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
ribonuclease bn; K07058 membrane protein
SCNpilot_cont_300_bf_scaffold_180_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2064..2402)
DNA (339bp) protein (113aa)
Putative membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J2JYF6_9BURK
Putative membrane protein {ECO:0000313|EMBL:EJL72920.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2516..2899
DNA (384bp) protein (128aa)
Thioredoxin domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J3CJS9_9BURK
Thioredoxin domain-containing protein {ECO:0000313|EMBL:EJL72921.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
thioredoxin
SCNpilot_cont_300_bf_scaffold_180_curated_6
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2914..3576
DNA (663bp) protein (221aa)
Putative nucleoside-diphosphate sugar epimerase n=1 Tax=Variovorax sp. CF313 RepID=J2T4E6_9BURK
Putative nucleoside-diphosphate sugar epimerase {ECO:0000313|EMBL:EJL72922.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3583..4533)
DNA (951bp) protein (317aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KIK0_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL72923.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_180_curated_8
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4649..6079
DNA (1431bp) protein (477aa)
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase n=1 Tax=Variovorax sp. CF313 RepID=J3CJM7_9BURK
Acetylornithine deacetylase/succinyldiaminopimelate desuccinylase-like deacylase {ECO:0000313|EMBL:EJL72924.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative peptidase, M20/M25/M40 family
SCNpilot_cont_300_bf_scaffold_180_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6088..7077
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JYG1_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL72925.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative Bug-like extracytoplasmic solute binding receptor, TTT family
SCNpilot_cont_300_bf_scaffold_180_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7208..8248
DNA (1041bp) protein (347aa)
Putative Bug-like extracytoplasmic solute binding receptor, TTT family n=1 Tax=Variovorax paradoxus B4 RepID=T1X8J4_VARPD
putative Bug-like extracytoplasmic solute binding receptor, TTT family
Putative Bug-like extracytoplasmic solute binding receptor, TTT family {ECO:0000313|EMBL:AGU48873.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_180_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8267..9088)
DNA (822bp) protein (274aa)
Alpha/beta hydrolase family protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X961_VARPD
alpha/beta hydrolase family protein
Alpha/beta hydrolase family protein {ECO:0000313|EMBL:AGU48874.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_180_curated_12
unknown

Not on your lists

comp(9139..10545)
DNA (1407bp) protein (469aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_180_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10554..11858)
DNA (1305bp) protein (435aa)
O-acetylhomoserine aminocarboxypropyltransferase (EC:2.5.1.49); K01740 O-acetylhomoserine (thiol)-lyase [EC:2.5.1.49]
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:ACS18328.1}; EC=2.5.1.49 {ECO:0000313|EMBL:ACS18328.1};; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
O-acetylhomoserine/O-acetylserine sulfhydrylase n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CTX8_VARPS
SCNpilot_cont_300_bf_scaffold_180_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12036..12488
DNA (453bp) protein (151aa)
CBS domain-containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2KIK4_9BURK
CBS domain-containing protein {ECO:0000313|EMBL:EJL72928.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
cbs domain containing protein
SCNpilot_cont_300_bf_scaffold_180_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12519..13616)
DNA (1098bp) protein (366aa)
inosine/uridine-preferring nucleoside hydrolase; K01239 purine nucleosidase [EC:3.2.2.1]
Inosine-uridine nucleoside N-ribohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J3CJN1_9BURK
Inosine-uridine nucleoside N-ribohydrolase {ECO:0000313|EMBL:EJL72929.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_180_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13621..14598)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6T2_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36038.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14607..15704)
DNA (1098bp) protein (366aa)
adenosine deaminase (EC:3.5.4.4); K01488 adenosine deaminase [EC:3.5.4.4]
Adenosine deaminase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6T3_VARPE
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33707.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_180_curated_18
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15792..16745
DNA (954bp) protein (318aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00036303EF
Transcriptional regulator {ECO:0000313|EMBL:EJL72932.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator, LysR family
SCNpilot_cont_300_bf_scaffold_180_curated_19
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16760..17389)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003742A02
Uncharacterized protein {ECO:0000313|EMBL:KJK26396.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17386..18279)
DNA (894bp) protein (298aa)
universal stress protein UspA n=1 Tax=Variovorax paradoxus RepID=UPI00035E004A
UspA domain protein
UspA domain protein {ECO:0000313|EMBL:ACS22590.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_180_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18637..19857)
DNA (1221bp) protein (407aa)
poly(3-hydroxybutyrate) depolymerase n=1 Tax=Variovorax paradoxus RepID=UPI000377731F
polyhydroxyalkanoate depolymerase, intracellular
Polyhydroxyalkanoate depolymerase, intracellular {ECO:0000313|EMBL:AGU48881.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_180_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19939..20595
DNA (657bp) protein (219aa)
glutathione s-transferase domain-containing protein; K04097 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J3CJN4_9BURK
Glutathione S-transferase {ECO:0000313|EMBL:EJL72934.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_180_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20596..20943)
DNA (348bp) protein (116aa)
dopa 45-dioxygenase; K10253 DOPA 4,5-dioxygenase [EC:1.14.99.-]
Aromatic ring-cleaving dioxygenase n=1 Tax=Variovorax sp. CF313 RepID=J2KIL4_9BURK
Aromatic ring-cleaving dioxygenase {ECO:0000313|EMBL:EJL72938.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_180_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20951..21592)
DNA (642bp) protein (214aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00035DC513
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33702.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21589..22641)
DNA (1053bp) protein (351aa)
polyketide cyclase n=1 Tax=Variovorax paradoxus RepID=UPI00035C929E
Polyketide cyclase / dehydrase and lipid transport {ECO:0000313|EMBL:EJL72940.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22683..23639)
DNA (957bp) protein (319aa)
Methyltransferase type 11 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7P4_VARPE
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ADU36057.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23675..24097)
DNA (423bp) protein (141aa)
thiol-disulfide oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI000364BA23
Uncharacterized protein {ECO:0000313|EMBL:EJL72942.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
thiol-disulfide oxidoreductase DCC
SCNpilot_cont_300_bf_scaffold_180_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24160..24738)
DNA (579bp) protein (193aa)
Putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KIL9_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EJL72943.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative transcriptional regulator
SCNpilot_cont_300_bf_scaffold_180_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24858..25952
DNA (1095bp) protein (365aa)
DNA repair photolyase n=1 Tax=Variovorax sp. CF313 RepID=J3CJP1_9BURK
DNA repair photolyase {ECO:0000313|EMBL:EJL72944.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
radical SAM protein
SCNpilot_cont_300_bf_scaffold_180_curated_30
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25903..26868)
DNA (966bp) protein (322aa)
Putative transcriptional regulator, LysR family n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3R8Q8_CUPTR
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG23098.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
LysR family transcriptional regulator
Displaying items 1-30 of 119 in total

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