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SCNpilot_cont_300_bf_scaffold_180_curated

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Displaying items 61-90 of 119 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_180_curated_61
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(62722..63366)
DNA (645bp) protein (215aa)
glutathione s-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
Glutathione S-transferase n=1 Tax=Variovorax sp. CF313 RepID=J3CJQ1_9BURK
Glutathione S-transferase {ECO:0000313|EMBL:EJL72959.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_180_curated_62
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(63363..64208)
DNA (846bp) protein (282aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JYK3_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL72960.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_63
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(64217..64888)
DNA (672bp) protein (224aa)
(2Fe-2S)-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036F5B12
rieske (2fe-2S) iron-sulfur domain
Rieske (2Fe-2S) iron-sulfur domain {ECO:0000313|EMBL:ADU36087.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_64
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

65003..65971
DNA (969bp) protein (323aa)
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000374B28F
Transcriptional regulator {ECO:0000313|EMBL:EJL72962.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_180_curated_65
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

66011..66451
DNA (441bp) protein (147aa)
3-dehydroquinate dehydratase (EC:4.2.1.10); K03786 3-dehydroquinate dehydratase II [EC:4.2.1.10]
3-dehydroquinate dehydratase {ECO:0000255|HAMAP-Rule:MF_00169}; Short=3-dehydroquinase {ECO:0000255|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000255|HAMAP-Rule:MF_00169};; Type II DHQase {ECO:0000255|HAMAP-Rule:MF_00169}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
3-dehydroquinate dehydratase n=1 Tax=Variovorax paradoxus RepID=UPI00037F3BDC
SCNpilot_cont_300_bf_scaffold_180_curated_66
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(66452..67975)
DNA (1524bp) protein (508aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CJQ5_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL72964.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
spovr family protein
SCNpilot_cont_300_bf_scaffold_180_curated_67
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(67972..69264)
DNA (1293bp) protein (431aa)
UPF0229 protein Varpa_1880 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7S7_VARPE
hypothetical protein; K09786 hypothetical protein
UPF0229 protein Varpa_1880 {ECO:0000256|HAMAP-Rule:MF_01232}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_68
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(69405..71327)
DNA (1923bp) protein (641aa)
Putative serine protein kinase, PrkA n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7S8_VARPE
serine protein kinase, prka; K07180 serine protein kinase
Putative serine protein kinase, PrkA {ECO:0000313|EMBL:ADU36091.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_69
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(72020..73159)
DNA (1140bp) protein (380aa)
Chaperone protein DnaJ n=1 Tax=Variovorax sp. CF313 RepID=J2T4J1_9BURK
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
dnaJ1; chaperone protein DnaJ
SCNpilot_cont_300_bf_scaffold_180_curated_70
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(73268..75205)
DNA (1938bp) protein (646aa)
Chaperone protein DnaK n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7T0_VARPE
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
chaperone protein dnak; K04043 molecular chaperone DnaK
SCNpilot_cont_300_bf_scaffold_180_curated_71
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(75331..75867)
DNA (537bp) protein (179aa)
Protein GrpE n=1 Tax=Variovorax sp. CF313 RepID=J3CJQ8_9BURK
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
heat shock protein GrpE; K03687 molecular chaperone GrpE
SCNpilot_cont_300_bf_scaffold_180_curated_72
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76055..76405)
DNA (351bp) protein (117aa)
peptidylprolyl isomerase (EC:5.2.1.8); K03772 FKBP-type peptidyl-prolyl cis-trans isomerase FkpA [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU003915, ECO:0000256|RuleBase:RU004231}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU003915};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Variovorax sp. CF313 RepID=J2JUD0_9BURK
SCNpilot_cont_300_bf_scaffold_180_curated_73
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(76491..76934)
DNA (444bp) protein (148aa)
Putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CGZ8_9BURK
Putative transcriptional regulator {ECO:0000313|EMBL:EJL71469.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_180_curated_74
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(77114..77965)
DNA (852bp) protein (284aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00662, ECO:0000256|SAAS:SAAS00093350};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phosphatidylserine decarboxylase; K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Variovorax sp. CF313 RepID=J2KE71_9BURK
SCNpilot_cont_300_bf_scaffold_180_curated_75
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(78058..79050)
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7T5_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36098.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_76
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(79076..80056)
DNA (981bp) protein (327aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00035EF1EB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS18369.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_180_curated_77
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80107..80868)
DNA (762bp) protein (254aa)
short-chain dehydrogenase/reductase sdr; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
Short-chain dehydrogenase/reductase SDR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7T8_VARPE
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33664.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_180_curated_78
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(80891..82471)
DNA (1581bp) protein (527aa)
galactarate dehydratase (EC:4.2.1.42); K01708 galactarate dehydratase [EC:4.2.1.42]
Galactarate dehydratase n=1 Tax=Variovorax sp. CF313 RepID=J2KE67_9BURK
Galactarate dehydratase {ECO:0000313|EMBL:EJL71463.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_180_curated_79
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(82490..83842)
DNA (1353bp) protein (451aa)
TRAP transporter, DctM subunit n=1 Tax=Variovorax sp. CF313 RepID=J2T0I1_9BURK
TRAP transporter, DctM subunit {ECO:0000313|EMBL:EJL71462.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TRAP C4-dicarboxylate transporter subunit DctM
SCNpilot_cont_300_bf_scaffold_180_curated_80
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(83833..84327)
DNA (495bp) protein (165aa)
TRAP-type C4-dicarboxylate transport system, small permease component n=1 Tax=Variovorax sp. CF313 RepID=J3CHF1_9BURK
TRAP-type C4-dicarboxylate transport system, small permease component {ECO:0000313|EMBL:EJL71461.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
tripartite ATP-independent periplasmic transporter DctQ component
SCNpilot_cont_300_bf_scaffold_180_curated_81
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(84470..85462)
DNA (993bp) protein (331aa)
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family n=1 Tax=Variovorax sp. CF313 RepID=J2JUB9_9BURK
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family {ECO:0000313|EMBL:EJL71460.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
TRAP-type C4-dicarboxylate transport system, periplasmic component
SCNpilot_cont_300_bf_scaffold_180_curated_82
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85519..86409)
DNA (891bp) protein (297aa)
gluconolactonase n=1 Tax=Variovorax paradoxus RepID=UPI00035F83D6
Gluconolactonase {ECO:0000313|EMBL:EJL71459.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
smp-30/gluconolaconase/lre-like region-containing protein
SCNpilot_cont_300_bf_scaffold_180_curated_83
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(86399..87220)
DNA (822bp) protein (274aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V7U4_VARPE
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:ADU36107.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_84
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(87235..88029)
DNA (795bp) protein (265aa)
Periplasmic component of amino acid ABC-type transporter/signal transduction system n=1 Tax=Herbaspirillum sp. CF444 RepID=J2U758_9BURK
Periplasmic component of amino acid ABC-type transporter/signal transduction system {ECO:0000313|EMBL:EJL87012.1}; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
amino acid ABC transporter periplasmic protein
SCNpilot_cont_300_bf_scaffold_180_curated_85
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88086..88814)
DNA (729bp) protein (243aa)
ABC-type polar amino acid transport system, ATPase component n=1 Tax=Herbaspirillum sp. CF444 RepID=J3D8W7_9BURK
ABC-type polar amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL87011.1}; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
amino acid ABC transporter ATPase
SCNpilot_cont_300_bf_scaffold_180_curated_86
Burkholderia sp. SJ98, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(88798..89454)
DNA (657bp) protein (219aa)
Amino acid ABC transporter permease n=1 Tax=Burkholderia sp. SJ98 RepID=K8R721_9BURK
Amino acid ABC transporter permease {ECO:0000313|EMBL:EKS69890.1}; TaxID=406819 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. SJ98.;"
ABC-type amino acid transport system permease component protein
SCNpilot_cont_300_bf_scaffold_180_curated_87
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(89451..90200)
DNA (750bp) protein (250aa)
ABC transporter permease n=2 Tax=Pandoraea RepID=V5UCB9_9BURK
ABC transporter permease {ECO:0000313|EMBL:AHB04626.1}; TaxID=1416914 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa 3kgm.;"
ABC-type amino acid transport system permease component protein
SCNpilot_cont_300_bf_scaffold_180_curated_88
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

90300..91184
DNA (885bp) protein (295aa)
GntR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI00037C62F6
GntR family transcriptional regulator
GntR domain protein {ECO:0000313|EMBL:ADU36108.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_180_curated_89
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

91296..92294
DNA (999bp) protein (333aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CHE8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL71456.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_180_curated_90
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

92346..93257
DNA (912bp) protein (304aa)
kdgD; 5-dehydro-4-deoxyglucarate dehydratase KdgD (EC:4.2.1.41)
Probable 5-dehydro-4-deoxyglucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; EC=4.2.1.41 {ECO:0000256|HAMAP-Rule:MF_00694};; 5-keto-4-deoxy-glucarate dehydratase {ECO:0000256|HAMAP-Rule:MF_00694}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Probable 5-dehydro-4-deoxyglucarate dehydratase n=1 Tax=Variovorax paradoxus B4 RepID=T1X9S6_VARPD
Displaying items 61-90 of 119 in total

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