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SCNpilot_cont_300_bf_scaffold_403_curated

Search features with annotation key words

Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_403_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(275..631)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Comamonas testosteroni ATCC 11996 RepID=H1RMG5_COMTE
Putative uncharacterized protein {ECO:0000313|EMBL:EHN66493.1}; TaxID=1009852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni ATCC 11996.;"
SCNpilot_cont_300_bf_scaffold_403_curated_2
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2087..4243)
DNA (2157bp) protein (719aa)
Phage integrase n=1 Tax=Janthinobacterium sp. HH01 PF01_9BURK">RepID=L9PF01_9BURK
Putative phage integrase {ECO:0000313|EMBL:CDG84020.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
h16_A0822; phage integrase
SCNpilot_cont_300_bf_scaffold_403_curated_3
Janthinobacterium sp. HH01, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4243..6123)
DNA (1881bp) protein (627aa)
hypothetical protein n=1 Tax=Janthinobacterium lividum RepID=UPI0002891DC7
Uncharacterized protein {ECO:0000313|EMBL:ELX10181.1}; TaxID=1198452 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. HH01.;"
h16_A0821; hypothetical protein
SCNpilot_cont_300_bf_scaffold_403_curated_4
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6120..7424)
DNA (1305bp) protein (435aa)
site-specific recombinase XerD n=1 Tax=Janthinobacterium lividum RepID=UPI00028830CC
Phage integrase family protein {ECO:0000313|EMBL:CDG84022.1}; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
xerD2; site-specific recombinase XerD
SCNpilot_cont_300_bf_scaffold_403_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8253..8696
DNA (444bp) protein (148aa)
phospholipase n=1 Tax=Variovorax paradoxus RepID=UPI000376CA31
phospholipase d/transphosphatidylase
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:ADU38624.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_6
Ralstonia sp. GA3-3, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8674..9045)
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. GA3-3 RepID=R7XL50_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EON20049.1}; TaxID=1229514 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. GA3-3.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_403_curated_7
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9117..9602
DNA (486bp) protein (162aa)
Uncharacterized conserved protein n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SYP3_JANMA
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:ABR91229.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
SCNpilot_cont_300_bf_scaffold_403_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9684..10031
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XFE3_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU51049.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_403_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10043..10513)
DNA (471bp) protein (157aa)
GCN5-related N-acetyltransferase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB82_VARPE
GCN5-like N-acetyltransferaser
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADU38612.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_10
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10577..11548)
DNA (972bp) protein (324aa)
cobalamin biosynthesis protein P47K n=1 Tax=Variovorax paradoxus RepID=UPI0003647AB2
cobalamin synthesis protein p47k
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ADU38611.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11556..13232)
DNA (1677bp) protein (559aa)
Amidohydrolase 3 n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB80_VARPE
amidohydrolase 3; K07047
Amidohydrolase 3 {ECO:0000313|EMBL:ADU38610.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_12
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13229..14266)
DNA (1038bp) protein (346aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000382A0FD
oligopeptide/dipeptide ABC transporter ATPase; K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADU38609.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14263..15315)
DNA (1053bp) protein (351aa)
peptide ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037FF4E4
oligopeptide/dipeptide ABC transporter ATPase; K02031 peptide/nickel transport system ATP-binding protein
Oligopeptide/dipeptide ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADU38608.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_14
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15466..16377)
DNA (912bp) protein (304aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB77_VARPE
binding-protein-dependent transport systems inner membrane component; K02034 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADU38607.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16374..17360)
DNA (987bp) protein (329aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00037B44E9
putative peptide ABC transporter, permease protein
Putative peptide ABC transporter, permease protein {ECO:0000313|EMBL:AGU51042.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_403_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17373..18986)
DNA (1614bp) protein (538aa)
peptide ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI000378F8CB
family 5 extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Extracellular solute-binding protein family 5 {ECO:0000313|EMBL:ADU38605.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19186..20676)
DNA (1491bp) protein (497aa)
FAD-dependent oxidoreductase n=1 Tax=Variovorax paradoxus RepID=UPI000381AAE7
fad dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ADU38604.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20720..21100)
DNA (381bp) protein (127aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB73_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU38603.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21282..22817
DNA (1536bp) protein (512aa)
Transcriptional regulator, GntR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB72_VARPE
Variovorax paradoxus strain MEDvA23 contig_80, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ22977.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
GntR family transcriptional regulator; K00375 GntR family transcriptional regulator / MocR family aminotransferase
SCNpilot_cont_300_bf_scaffold_403_curated_20
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22995..24005
DNA (1011bp) protein (337aa)
Putative aliphatic sulfonates/taurine ABC transporter, periplasmic binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XEU3_VARPD
putative aliphatic sulfonates/taurine ABC transporter, periplasmic binding protein
Putative aliphatic sulfonates/taurine ABC transporter, periplasmic binding protein {ECO:0000313|EMBL:AGU51036.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_403_curated_21
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24059..24847
DNA (789bp) protein (263aa)
ABC transporter; K10831 taurine transport system ATP-binding protein [EC:3.6.3.36]
ABC transporter ATP-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036A3CD9
ABC transporter related protein {ECO:0000313|EMBL:ADU38599.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_22
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24840..25736
DNA (897bp) protein (299aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB68_VARPE
Variovorax paradoxus strain MEDvA23 contig_97, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ20481.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
binding-protein-dependent transport systems inner membrane component; K15552 taurine transport system permease protein
SCNpilot_cont_300_bf_scaffold_403_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25654..26670)
DNA (1017bp) protein (339aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6VB67_VARPE
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU38597.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27013..27315
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UZF8_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU36671.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_403_curated_25
unknown

Not on your lists

comp(27420..27815)
DNA (396bp) protein (132aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_403_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28481..28747
DNA (267bp) protein (89aa)
Flagellar biosynthesis pathway, component FliQ n=1 Tax=Variovorax sp. CF313 RepID=J3CIN1_9BURK
Flagellar biosynthesis pathway, component FliQ {ECO:0000313|EMBL:EJL72206.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
export protein FliQ family 3
SCNpilot_cont_300_bf_scaffold_403_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28849..29565
DNA (717bp) protein (239aa)
Flagellar biosynthesis pathway, component FliR n=1 Tax=Variovorax sp. CF313 RepID=J2JWH5_9BURK
Flagellar biosynthesis pathway, component FliR {ECO:0000313|EMBL:EJL72205.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type III secretion system inner membrane R protein; K02421 flagellar biosynthetic protein FliR
SCNpilot_cont_300_bf_scaffold_403_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29565..30659
DNA (1095bp) protein (365aa)
Type III secretion exporter n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN4_VARPS
type III secretion exporter; K02401 flagellar biosynthetic protein FlhB
Type III secretion exporter {ECO:0000313|EMBL:ACS18890.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_403_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30656..32767
DNA (2112bp) protein (704aa)
Flagellar biosynthesis protein FlhA n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN5_VARPS
Flagellar biosynthesis protein FlhA {ECO:0000313|EMBL:ACS18891.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
flagellar biosynthesis protein FlhA; K02400 flagellar biosynthesis protein FlhA
SCNpilot_cont_300_bf_scaffold_403_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32787..33572
DNA (786bp) protein (262aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CXN6_VARPS
hypothetical protein; K02392 flagellar basal-body rod protein FlgG
Uncharacterized protein {ECO:0000313|EMBL:ACS18892.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
Displaying items 1-30 of 52 in total

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