ggKbase home page
Advanced Search
Search Help

solids_Sphingobacteriales_3

SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_42_1
In projects: scnpilot_solids_dereplicated  |  SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK Manually curated genome

Properties

Avg. coverage: 1.00 Longest contig: 223.84 Kbp Bin length: 5.33 Mbp GC content: 42.32 %
Contigs count: 116 Features count: 4502 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Displaying items 51-100 of 116 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_906_curated
Phylum: Bacteroidetes (71.43%)
35 38968 bp 40.34 1.00 87.53
scnpilot_solids2_trim150_scaffold_3240_curated
Phylum: Bacteroidetes (50%)
10 7412 bp 39.54 1.00 87.55
scnpilot_solids2_trim150_scaffold_2563_curated
Species: Niastella koreensis (50%)
10 9289 bp 41.24 1.00 87.68
scnpilot_solids2_trim150_scaffold_3826_curated
Order: Sphingobacteriales (60%)
5 6134 bp 44.42 1.00 87.74
scnpilot_solids2_trim150_scaffold_199_curated
Phylum: Bacteroidetes (68.32%)
101 115964 bp 42.52 1.00 88.01
scnpilot_solids2_trim150_scaffold_196_curated
Order: Sphingobacteriales (60.27%)
73 80307 bp 42.18 1.00 88.03
scnpilot_solids2_trim150_scaffold_677_curated
Order: Sphingobacteriales (69.57%)
23 28744 bp 42.57 1.00 88.05
scnpilot_solids2_trim150_scaffold_195_curated
Order: Sphingobacteriales (86.76%)
68 80578 bp 41.33 1.00 88.26
scnpilot_solids2_trim150_scaffold_153_curated
Order: Sphingobacteriales (58.23%)
79 97358 bp 42.74 1.00 88.30
scnpilot_solids2_trim150_scaffold_493_curated
Phylum: Bacteroidetes (82.61%)
23 37313 bp 42.90 1.00 88.34
scnpilot_solids2_trim150_scaffold_25_curated
Order: Sphingobacteriales (60.56%)
180 223840 bp 42.45 1.00 88.60
scnpilot_solids2_trim150_scaffold_54_curated
Phylum: Bacteroidetes (88.89%)
126 161835 bp 43.05 1.00 88.66
scnpilot_solids2_trim150_scaffold_235_curated
Order: Sphingobacteriales (68%)
50 66168 bp 43.10 1.00 88.86
scnpilot_solids2_trim150_scaffold_68_curated
Order: Sphingobacteriales (67.33%)
150 154473 bp 42.11 1.00 88.89
scnpilot_solids2_trim150_scaffold_1125_curated
Order: Sphingobacteriales (73.33%)
15 19345 bp 44.18 1.00 88.97
scnpilot_solids2_trim150_scaffold_37_curated
Order: Sphingobacteriales (76.07%)
163 206842 bp 42.40 1.00 89.00
scnpilot_solids2_trim150_scaffold_301_curated
Order: Sphingobacteriales (66%)
50 53275 bp 43.22 1.00 89.05
scnpilot_solids2_trim150_scaffold_472_curated
Order: Sphingobacteriales (62.86%)
35 38435 bp 43.22 1.00 89.17
scnpilot_solids2_trim150_scaffold_106_curated
Order: Sphingobacteriales (51.06%)
94 116274 bp 39.33 1.00 89.22
scnpilot_solids2_trim150_scaffold_374_curated
Phylum: Bacteroidetes (60.71%)
56 53952 bp 40.33 1.00 89.26
scnpilot_solids2_trim150_scaffold_173_curated
Order: Sphingobacteriales (52.44%)
82 87857 bp 43.94 1.00 89.52
scnpilot_solids2_trim150_scaffold_31_curated
Order: Sphingobacteriales (56.21%)
153 206006 bp 42.49 1.00 89.56
scnpilot_solids2_trim150_scaffold_505_curated
Order: Sphingobacteriales (74%)
50 63481 bp 41.39 1.00 89.60
scnpilot_solids2_trim150_scaffold_305_curated
Phylum: Bacteroidetes (55.56%)
36 52541 bp 41.68 1.00 89.62
scnpilot_solids2_trim150_scaffold_662_curated
Order: Sphingobacteriales (67.86%)
28 29138 bp 42.06 1.00 89.65
scnpilot_solids2_trim150_scaffold_2041_curated
Order: Sphingobacteriales (83.33%)
12 11609 bp 42.92 1.00 89.67
scnpilot_solids2_trim150_scaffold_88_curated
Order: Sphingobacteriales (63.07%)
176 223422 bp 43.72 1.00 89.67
scnpilot_solids2_trim150_scaffold_178_curated
Order: Sphingobacteriales (81.69%)
71 84331 bp 42.34 1.00 89.86
scnpilot_solids2_trim150_scaffold_610_curated
Phylum: Bacteroidetes (83.87%)
31 30910 bp 42.10 1.00 89.91
scnpilot_solids2_trim150_scaffold_3470_curated
Phylum: Bacteroidetes (60%)
5 6850 bp 40.00 1.00 90.13
scnpilot_solids2_trim150_scaffold_55_curated
Order: Sphingobacteriales (56.57%)
175 223174 bp 42.82 1.00 90.16
scnpilot_solids2_trim150_scaffold_544_curated
Phylum: Bacteroidetes (72.41%)
29 34200 bp 43.04 1.00 90.34
scnpilot_solids2_trim150_scaffold_150_curated
Order: Sphingobacteriales (58.75%)
80 115242 bp 42.15 1.00 90.62
scnpilot_solids2_trim150_scaffold_664_curated
Order: Sphingobacteriales (70%)
20 29116 bp 42.25 1.00 90.66
scnpilot_solids2_trim150_scaffold_280_curated
Phylum: Bacteroidetes (81.48%)
54 57842 bp 43.09 1.00 90.71
scnpilot_solids2_trim150_scaffold_827_curated
Phylum: Bacteroidetes (55%)
20 24780 bp 40.75 1.00 90.79
scnpilot_solids2_trim150_scaffold_389_curated
Order: Sphingobacteriales (72.22%)
36 44533 bp 42.35 1.00 90.85
scnpilot_solids2_trim150_scaffold_204_curated
Order: Sphingobacteriales (65.22%)
69 77685 bp 41.93 1.00 90.88
scnpilot_solids2_trim150_scaffold_254_curated
Order: Sphingobacteriales (81.03%)
58 62026 bp 41.34 1.00 90.92
scnpilot_solids2_trim150_scaffold_534_curated
Phylum: Bacteroidetes (80.77%)
26 34876 bp 42.06 1.00 90.94
scnpilot_solids2_trim150_scaffold_688_curated
Phylum: Bacteroidetes (54.55%)
22 28505 bp 44.33 1.00 91.02
scnpilot_solids2_trim150_scaffold_94_curated
Order: Sphingobacteriales (65.45%)
110 126398 bp 42.53 1.00 91.22
scnpilot_solids2_trim150_scaffold_261_curated
Phylum: Bacteroidetes (66.67%)
57 61631 bp 40.91 1.00 91.37
scnpilot_solids2_trim150_scaffold_777_curated
Order: Sphingobacteriales (79.17%)
24 25939 bp 42.75 1.00 91.56
scnpilot_solids2_trim150_scaffold_240_curated
Order: Sphingobacteriales (50.65%)
77 97565 bp 42.08 1.00 91.61
scnpilot_solids2_trim150_scaffold_835_curated
Order: Sphingobacteriales (80%)
20 24725 bp 41.96 1.00 92.01
scnpilot_solids2_trim150_scaffold_2053_curated
Order: Cytophagales (57.14%)
7 11580 bp 42.39 1.00 92.15
scnpilot_solids2_trim150_scaffold_355_curated
Order: Sphingobacteriales (60.47%)
43 58771 bp 42.63 1.00 92.22
scnpilot_solids2_trim150_scaffold_255_curated
Phylum: Bacteroidetes (82.14%)
56 61803 bp 41.50 1.00 92.25
scnpilot_solids2_trim150_scaffold_973_curated
Order: Sphingobacteriales (50%)
18 22162 bp 40.89 1.00 92.69
Displaying items 51-100 of 116 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.