ggKbase home page
Advanced Search
Search Help

solids_Sphingobacteriales_3

SCNPILOT_SOLID2_TRIM150_Sphingobacteriales_42_1
In projects: scnpilot_solids_dereplicated  |  SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK Manually curated genome

Properties

Avg. coverage: 1.00 Longest contig: 223.84 Kbp Bin length: 5.33 Mbp GC content: 42.32 %
Contigs count: 116 Features count: 4502 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Displaying items 51-100 of 116 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_926_curated
Phylum: Bacteroidetes (90.48%)
21 22897 bp 42.73 1.00 84.47
scnpilot_solids2_trim150_scaffold_1012_curated
Order: Sphingobacteriales (72.73%)
22 21246 bp 44.55 1.00 77.42
scnpilot_solids2_trim150_scaffold_688_curated
Phylum: Bacteroidetes (54.55%)
22 28505 bp 44.33 1.00 91.02
scnpilot_solids2_trim150_scaffold_604_curated
Phylum: Bacteroidetes (77.27%)
22 31333 bp 42.70 1.00 80.68
scnpilot_solids2_trim150_scaffold_677_curated
Order: Sphingobacteriales (69.57%)
23 28744 bp 42.57 1.00 88.05
scnpilot_solids2_trim150_scaffold_493_curated
Phylum: Bacteroidetes (82.61%)
23 37313 bp 42.90 1.00 88.34
scnpilot_solids2_trim150_scaffold_667_curated
Order: Sphingobacteriales (79.17%)
24 29059 bp 42.31 1.00 93.16
scnpilot_solids2_trim150_scaffold_777_curated
Order: Sphingobacteriales (79.17%)
24 25939 bp 42.75 1.00 91.56
scnpilot_solids2_trim150_scaffold_776_curated
Phylum: Bacteroidetes (76%)
25 26012 bp 42.07 1.00 79.20
scnpilot_solids2_trim150_scaffold_762_curated
Phylum: Bacteroidetes (76%)
25 26387 bp 41.80 1.00 85.60
scnpilot_solids2_trim150_scaffold_534_curated
Phylum: Bacteroidetes (80.77%)
26 34876 bp 42.06 1.00 90.94
scnpilot_solids2_trim150_scaffold_601_curated
Order: Sphingobacteriales (61.54%)
26 31660 bp 43.16 1.00 86.03
scnpilot_solids2_trim150_scaffold_662_curated
Order: Sphingobacteriales (67.86%)
28 29138 bp 42.06 1.00 89.65
scnpilot_solids2_trim150_scaffold_544_curated
Phylum: Bacteroidetes (72.41%)
29 34200 bp 43.04 1.00 90.34
scnpilot_solids2_trim150_scaffold_504_curated
Phylum: Bacteroidetes (73.33%)
30 36602 bp 39.93 1.00 73.31
scnpilot_solids2_trim150_scaffold_1137_curated
Order: Sphingobacteriales (53.33%)
30 30674 bp 42.25 1.00 84.20
scnpilot_solids2_trim150_scaffold_610_curated
Phylum: Bacteroidetes (83.87%)
31 30910 bp 42.10 1.00 89.91
scnpilot_solids2_trim150_scaffold_547_curated
Phylum: Bacteroidetes (70.97%)
31 34725 bp 44.76 1.00 85.22
scnpilot_solids2_trim150_scaffold_529_curated
Order: Sphingobacteriales (78.79%)
33 35168 bp 41.84 1.00 84.77
scnpilot_solids2_trim150_scaffold_472_curated
Order: Sphingobacteriales (62.86%)
35 38435 bp 43.22 1.00 89.17
scnpilot_solids2_trim150_scaffold_906_curated
Phylum: Bacteroidetes (71.43%)
35 38968 bp 40.34 1.00 87.53
scnpilot_solids2_trim150_scaffold_733_curated
Phylum: Bacteroidetes (71.43%)
35 51608 bp 42.49 1.00 84.28
scnpilot_solids2_trim150_scaffold_467_curated
Order: Sphingobacteriales (69.44%)
36 38748 bp 42.02 1.00 86.44
scnpilot_solids2_trim150_scaffold_305_curated
Phylum: Bacteroidetes (55.56%)
36 52541 bp 41.68 1.00 89.62
scnpilot_solids2_trim150_scaffold_389_curated
Order: Sphingobacteriales (72.22%)
36 44533 bp 42.35 1.00 90.85
scnpilot_solids2_trim150_scaffold_411_curated
Order: Sphingobacteriales (57.89%)
38 42400 bp 39.99 1.00 85.09
scnpilot_solids2_trim150_scaffold_355_curated
Order: Sphingobacteriales (60.47%)
43 58771 bp 42.63 1.00 92.22
scnpilot_solids2_trim150_scaffold_328_curated
Phylum: Bacteroidetes (79.07%)
43 50324 bp 42.53 1.00 86.54
scnpilot_solids2_trim150_scaffold_353_curated
Order: Sphingobacteriales (67.39%)
46 48079 bp 40.57 1.00 84.47
scnpilot_solids2_trim150_scaffold_356_curated
Phylum: Bacteroidetes (78.72%)
47 47876 bp 41.03 1.00 85.19
scnpilot_solids2_trim150_scaffold_505_curated
Order: Sphingobacteriales (74%)
50 63481 bp 41.39 1.00 89.60
scnpilot_solids2_trim150_scaffold_235_curated
Order: Sphingobacteriales (68%)
50 66168 bp 43.10 1.00 88.86
scnpilot_solids2_trim150_scaffold_301_curated
Order: Sphingobacteriales (66%)
50 53275 bp 43.22 1.00 89.05
scnpilot_solids2_trim150_scaffold_246_curated
Phylum: Bacteroidetes (55.77%)
52 64022 bp 43.86 1.00 85.58
scnpilot_solids2_trim150_scaffold_354_curated
Order: Sphingobacteriales (54.72%)
53 65151 bp 42.19 1.00 85.50
scnpilot_solids2_trim150_scaffold_281_curated
Phylum: Bacteroidetes (70.37%)
54 57816 bp 39.92 1.00 80.72
scnpilot_solids2_trim150_scaffold_280_curated
Phylum: Bacteroidetes (81.48%)
54 57842 bp 43.09 1.00 90.71
scnpilot_solids2_trim150_scaffold_233_curated
Phylum: Bacteroidetes (90.91%)
55 66590 bp 43.14 1.00 85.23
scnpilot_solids2_trim150_scaffold_374_curated
Phylum: Bacteroidetes (60.71%)
56 53952 bp 40.33 1.00 89.26
scnpilot_solids2_trim150_scaffold_255_curated
Phylum: Bacteroidetes (82.14%)
56 61803 bp 41.50 1.00 92.25
scnpilot_solids2_trim150_scaffold_261_curated
Phylum: Bacteroidetes (66.67%)
57 61631 bp 40.91 1.00 91.37
scnpilot_solids2_trim150_scaffold_183_curated
Order: Sphingobacteriales (60.34%)
58 83995 bp 43.02 1.00 87.14
scnpilot_solids2_trim150_scaffold_254_curated
Order: Sphingobacteriales (81.03%)
58 62026 bp 41.34 1.00 90.92
scnpilot_solids2_trim150_scaffold_218_curated
Order: Sphingobacteriales (72.31%)
65 70802 bp 42.58 1.00 85.49
scnpilot_solids2_trim150_scaffold_177_curated
Order: Sphingobacteriales (64.18%)
67 86085 bp 43.28 1.00 86.95
scnpilot_solids2_trim150_scaffold_195_curated
Order: Sphingobacteriales (86.76%)
68 80578 bp 41.33 1.00 88.26
scnpilot_solids2_trim150_scaffold_204_curated
Order: Sphingobacteriales (65.22%)
69 77685 bp 41.93 1.00 90.88
scnpilot_solids2_trim150_scaffold_178_curated
Order: Sphingobacteriales (81.69%)
71 84331 bp 42.34 1.00 89.86
scnpilot_solids2_trim150_scaffold_215_curated
Order: Sphingobacteriales (59.72%)
72 71593 bp 42.54 1.00 86.74
scnpilot_solids2_trim150_scaffold_196_curated
Order: Sphingobacteriales (60.27%)
73 80307 bp 42.18 1.00 88.03
Displaying items 51-100 of 116 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.