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SCNpilot_P_inoc_Novosphingobium_63_5

SCNpilot_P_inoc_Sphingomonadales_63_6
In projects: SCNpilot_P_inoc  |  SCN_92

Consensus taxonomy: Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK Curated version: scnpilot_dereplicated_Sphingomonadales_1

Properties

Avg. coverage: 5.56 Longest contig: 100.14 Kbp Bin length: 3.52 Mbp GC content: 62.50 %
Contigs count: 210 Features count: 3441 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 50 / 55 MC: 1 BSCG 50 / 51 MC: 1 ASCG 11 / 38

Description

highly fragmented

Displaying items 101-150 of 210 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_654
Order: Sphingomonadales (94.12%)
51 52658 bp 64.04 5.70 91.31
scnpilot_p_inoc_scaffold_1555
Order: Sphingomonadales (96.15%)
26 19102 bp 59.53 5.52 91.23
scnpilot_p_inoc_scaffold_6086
Genus: Novosphingobium (50%)
8 6634 bp 63.45 5.61 91.21
scnpilot_p_inoc_scaffold_3941
Order: Sphingomonadales (92.31%)
13 14828 bp 61.71 5.96 91.21
scnpilot_p_inoc_scaffold_1269
Order: Sphingomonadales (85.71%)
21 23808 bp 59.74 5.00 91.04
scnpilot_p_inoc_scaffold_8512
Species: Altererythrobacter atlanticus (80%)
5 5246 bp 64.16 6.43 90.98
scnpilot_p_inoc_scaffold_6730
Genus: Sphingopyxis (66.67%)
3 6195 bp 64.92 4.82 90.90
scnpilot_p_inoc_scaffold_2011
Genus: Sphingobium (50%)
14 15084 bp 60.46 6.24 90.87
scnpilot_p_inoc_scaffold_1142
Order: Sphingomonadales (81.48%)
27 26671 bp 62.02 5.36 90.84
scnpilot_p_inoc_scaffold_1208
Genus: Novosphingobium (65.91%)
44 44580 bp 64.50 5.80 90.78
scnpilot_p_inoc_scaffold_1171
Genus: Novosphingobium (60%)
25 25714 bp 62.51 5.38 90.77
scnpilot_p_inoc_scaffold_790
Genus: Novosphingobium (50%)
44 42453 bp 61.69 5.41 90.76
scnpilot_p_inoc_scaffold_1207
Order: Sphingomonadales (92.16%)
51 45072 bp 62.54 5.26 90.74
scnpilot_p_inoc_scaffold_1641
Order: Sphingomonadales (94.12%)
17 18056 bp 62.17 5.60 90.73
scnpilot_p_inoc_scaffold_847
Order: Sphingomonadales (71.43%)
35 39841 bp 62.56 5.82 90.72
scnpilot_p_inoc_scaffold_967
Order: Sphingomonadales (96%)
25 33090 bp 62.59 5.27 90.69
scnpilot_p_inoc_scaffold_2028
Genus: Novosphingobium (53.33%)
30 16683 bp 62.25 5.73 90.69
scnpilot_p_inoc_scaffold_909
Order: Sphingomonadales (81.82%)
22 35252 bp 60.41 5.49 90.68
scnpilot_p_inoc_scaffold_2330
Order: Sphingomonadales (90.91%)
11 13262 bp 63.24 5.71 90.51
scnpilot_p_inoc_scaffold_1268
Order: Sphingomonadales (92%)
25 23813 bp 60.98 5.33 90.49
scnpilot_p_inoc_scaffold_1219
Species: Altererythrobacter atlanticus (62.5%)
24 24826 bp 62.13 5.47 90.49
scnpilot_p_inoc_scaffold_2173
Species: Altererythrobacter atlanticus (50%)
38 40165 bp 62.82 5.65 90.46
scnpilot_p_inoc_scaffold_1321
Species: Altererythrobacter atlanticus (70.59%)
17 22886 bp 62.72 5.18 90.37
scnpilot_p_inoc_scaffold_2700
Order: Sphingomonadales (100%)
12 11745 bp 62.23 5.12 90.14
scnpilot_p_inoc_scaffold_8814
Species: Altererythrobacter atlanticus (57.14%)
7 5131 bp 61.74 5.55 90.04
scnpilot_p_inoc_scaffold_1560
Order: Sphingomonadales (87.5%)
16 19003 bp 62.65 5.45 90.03
scnpilot_p_inoc_scaffold_1626
Order: Sphingomonadales (85%)
20 18252 bp 64.48 5.92 89.89
scnpilot_p_inoc_scaffold_680
Order: Sphingomonadales (79.07%)
43 56385 bp 61.42 5.50 89.89
scnpilot_p_inoc_scaffold_5362
Species: Altererythrobacter atlanticus (66.67%)
6 7258 bp 61.95 5.31 89.86
scnpilot_p_inoc_scaffold_2453
Species: Sphingomonas wittichii (58.33%)
12 12704 bp 65.10 6.07 89.78
scnpilot_p_inoc_scaffold_3652
Order: Sphingomonadales (78.57%)
14 10783 bp 62.01 5.83 89.78
scnpilot_p_inoc_scaffold_10077
Species: Sphingobium quisquiliarum (66.67%)
3 4673 bp 64.58 2.92 89.75
scnpilot_p_inoc_scaffold_3351
Genus: Novosphingobium (53.33%)
15 9981 bp 65.30 6.00 89.72
scnpilot_p_inoc_scaffold_5570
Order: Sphingomonadales (90%)
10 8652 bp 64.61 4.99 89.67
scnpilot_p_inoc_scaffold_8711
Species: Altererythrobacter atlanticus (83.33%)
6 5169 bp 62.29 5.95 89.61
scnpilot_p_inoc_scaffold_2901
Species: Altererythrobacter atlanticus (54.55%)
11 11060 bp 63.35 5.91 89.57
scnpilot_p_inoc_scaffold_1655
Order: Sphingomonadales (92.31%)
39 29594 bp 62.81 5.82 89.52
scnpilot_p_inoc_scaffold_2844
Order: Sphingomonadales (80%)
10 11228 bp 62.54 5.58 89.51
scnpilot_p_inoc_scaffold_1815
Order: Sphingomonadales (94.44%)
18 16452 bp 61.76 5.25 89.46
scnpilot_p_inoc_scaffold_3628
Order: Sphingomonadales (100%)
12 13198 bp 64.62 5.19 89.31
scnpilot_p_inoc_scaffold_4259
Order: Sphingomonadales (71.43%)
7 8456 bp 62.74 5.14 89.26
scnpilot_p_inoc_scaffold_926
Order: Sphingomonadales (78.79%)
33 34315 bp 61.71 5.60 89.24
scnpilot_p_inoc_scaffold_1007
Order: Sphingomonadales (88.89%)
54 58100 bp 61.86 5.57 89.13
scnpilot_p_inoc_scaffold_2136
Order: Sphingomonadales (100%)
18 14209 bp 62.57 5.24 89.12
scnpilot_p_inoc_scaffold_1430
Order: Sphingomonadales (62.3%)
61 48436 bp 62.86 5.49 89.09
scnpilot_p_inoc_scaffold_3223
Order: Sphingomonadales (76.47%)
17 13448 bp 63.36 5.86 88.83
scnpilot_p_inoc_scaffold_10185
Species: Altererythrobacter atlanticus (80%)
5 4642 bp 61.46 5.20 88.80
scnpilot_p_inoc_scaffold_5979
Order: Sphingomonadales (83.33%)
6 6708 bp 59.15 5.34 88.77
scnpilot_p_inoc_scaffold_2845
Order: Sphingomonadales (88.89%)
9 11221 bp 62.61 5.53 88.76
scnpilot_p_inoc_scaffold_2626
Order: Sphingomonadales (100%)
23 12043 bp 60.94 5.46 88.73
Displaying items 101-150 of 210 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.