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RIFOXYB1_FULL_Woesearchaeota_34_13

RIFOXYB1_FULL_Archaea_34_13
In projects: RIFOXYB1_FULL  |  archaea-rifleo2  |  rifle_organic_carbon  |  CPR_DPANN  |  cpr-dpann-all  |  DPANN  |  archaea_ggkbase

Consensus taxonomy: Archaea

Taxonomy override: Woesearchaeota

Description

May be good?

Displaying 36 items
contig # features sequence size GC content (%) Cov Coding Density (%)
rifoxyb1_full_scaffold_126
Domain: Archaea (62.6%)
125 107646 bp 34.35 13.82 93.04
rifoxyb1_full_scaffold_201
Domain: Archaea (54.55%)
109 107014 bp 34.01 13.87 92.73
rifoxyb1_full_scaffold_320
Domain: Archaea (50%)
63 66679 bp 33.46 13.42 92.94
rifoxyb1_full_scaffold_364
Domain: Archaea (69.77%)
43 37210 bp 33.90 13.25 92.97
rifoxyb1_full_scaffold_964 40 41269 bp 34.27 14.10 93.83
rifoxyb1_full_scaffold_742 39 31009 bp 33.33 13.06 93.20
rifoxyb1_full_scaffold_531
Domain: Archaea (55.56%)
36 40263 bp 32.55 13.10 94.08
rifoxyb1_full_scaffold_507
Domain: Archaea (76.47%)
34 30486 bp 33.86 13.22 96.71
rifoxyb1_full_scaffold_540
Domain: Archaea (59.38%)
32 36954 bp 34.64 12.18 94.27
rifoxyb1_full_scaffold_586 31 29745 bp 34.13 13.30 86.80
rifoxyb1_full_scaffold_797 29 22146 bp 32.81 12.97 84.81
rifoxyb1_full_scaffold_793 28 22192 bp 34.18 12.86 86.52
rifoxyb1_full_scaffold_1317 25 19551 bp 33.73 14.04 89.46
rifoxyb1_full_scaffold_1013 24 19472 bp 32.70 14.04 94.10
rifoxyb1_full_scaffold_815
Domain: Archaea (62.5%)
22 21754 bp 34.39 14.20 92.22
rifoxyb1_full_scaffold_869
Domain: Archaea (59.09%)
20 20698 bp 33.71 14.02 93.04
rifoxyb1_full_scaffold_912 20 19865 bp 32.90 10.35 92.88
rifoxyb1_full_scaffold_1334
Domain: Archaea (55%)
19 15517 bp 34.65 14.71 92.78
rifoxyb1_full_scaffold_2577 18 17163 bp 32.51 12.32 91.10
rifoxyb1_full_scaffold_2582 18 16946 bp 34.58 13.31 87.14
rifoxyb1_full_scaffold_1813
Domain: Archaea (63.16%)
18 14033 bp 34.68 13.91 89.92
rifoxyb1_full_scaffold_2179 16 16888 bp 34.81 13.73 87.93
rifoxyb1_full_scaffold_2824
Domain: Archaea (57.14%)
14 11664 bp 36.86 13.44 97.02
rifoxyb1_full_scaffold_2156
Domain: Archaea (50%)
14 12257 bp 34.49 13.76 85.67
rifoxyb1_full_scaffold_1022 13 18657 bp 34.98 11.64 94.24
rifoxyb1_full_scaffold_2882
Domain: Archaea (69.23%)
13 12073 bp 35.09 14.06 94.35
rifoxyb1_full_scaffold_1592 13 13938 bp 33.10 11.75 90.01
rifoxyb1_full_scaffold_4966 13 6488 bp 33.48 10.33 82.95
rifoxyb1_full_scaffold_3125
Domain: Archaea (50%)
12 8936 bp 33.85 13.29 94.20
rifoxyb1_full_scaffold_4466 12 6994 bp 32.34 13.32 92.01
rifoxyb1_full_scaffold_1748
Domain: Archaea (66.67%)
12 13143 bp 34.67 12.92 94.18
rifoxyb1_full_scaffold_5964
Domain: Archaea (72.73%)
11 8065 bp 33.53 13.86 93.11
rifoxyb1_full_scaffold_4328 11 7148 bp 33.06 13.64 89.35
rifoxyb1_full_scaffold_4335 10 8316 bp 32.66 12.70 76.55
rifoxyb1_full_scaffold_8237
Phylum: DPANN (55.56%)
8 6536 bp 35.95 12.39 87.07
rifoxyb1_full_scaffold_3170
Domain: Archaea (50%)
8 8877 bp 32.18 10.26 93.11
Displaying 36 items

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.