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NECEvent2014_3_3_Bifidobacterium_MSTE12-rel_59_9

NECEvent2014_3_3_Bifidobacterium_58_10
In projects: NECEvent2014_3_3

Consensus taxonomy: Bifidobacterium  →  Bifidobacteriales  →  Actinobacteria  →  Actinobacteria  →  Bacteria

Displaying items 1-50 of 239 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_3_scaffold_3635 173_001_scaffold_3635
Species: Bifidobacterium dentium (50%)
2 1464 bp 63.87 38.22 87.91
NECEvent2014_3_3_scaffold_749 173_001_scaffold_749
Species: Bifidobacterium dentium (50%)
6 7077 bp 48.78 16.30 94.87
NECEvent2014_3_3_scaffold_111 173_001_scaffold_111
Species: Bifidobacterium dentium (58.82%)
51 60311 bp 56.96 14.22 88.11
NECEvent2014_3_3_scaffold_1594 173_001_scaffold_1594
Species: Bifidobacterium dentium (50%)
2 3363 bp 54.65 13.51 92.24
NECEvent2014_3_3_scaffold_171 173_001_scaffold_171
Species: Bifidobacterium dentium (74.19%)
31 40535 bp 57.33 13.06 89.30
NECEvent2014_3_3_scaffold_184 173_001_scaffold_184
Species: Bifidobacterium sp. MSTE12 (63.16%)
38 35169 bp 54.08 12.96 85.41
NECEvent2014_3_3_scaffold_13 173_001_scaffold_13
Species: Bifidobacterium dentium (50.33%)
151 199158 bp 58.75 12.81 87.22
NECEvent2014_3_3_scaffold_329 173_001_scaffold_329
Species: Bifidobacterium dentium (54.55%)
11 15683 bp 60.35 12.79 89.81
NECEvent2014_3_3_scaffold_1299 173_001_scaffold_1299
Species: Bifidobacterium sp. MSTE12 (57.14%)
7 4072 bp 59.45 12.78 84.14
NECEvent2014_3_3_scaffold_162 173_001_scaffold_162
Species: Bifidobacterium dentium (64.1%)
39 43819 bp 56.44 12.68 84.82
NECEvent2014_3_3_scaffold_240 173_001_scaffold_240
Species: Bifidobacterium dentium (86.36%)
22 24280 bp 53.84 12.66 84.98
NECEvent2014_3_3_scaffold_178 173_001_scaffold_178
Species: Bifidobacterium sp. MSTE12 (71.43%)
35 36500 bp 49.37 12.61 90.64
NECEvent2014_3_3_scaffold_1618 173_001_scaffold_1618
Species: Bifidobacterium sp. MSTE12 (100%)
2 3309 bp 53.67 12.51 90.57
NECEvent2014_3_3_scaffold_291 173_001_scaffold_291
Species: Bifidobacterium dentium (64.71%)
17 19468 bp 59.16 12.51 89.90
NECEvent2014_3_3_scaffold_661 173_001_scaffold_661
Species: Bifidobacterium sp. MSTE12 (55.56%)
9 8041 bp 52.06 12.50 79.73
NECEvent2014_3_3_scaffold_1066 173_001_scaffold_1066
Species: Bifidobacterium dentium (60%)
5 4898 bp 60.21 12.49 91.08
NECEvent2014_3_3_scaffold_1919 173_001_scaffold_1919
Species: Bifidobacterium dentium (100%)
1 2767 bp 56.05 12.31 84.79
NECEvent2014_3_3_scaffold_142 173_001_scaffold_142
Species: Bifidobacterium sp. MSTE12 (72.09%)
43 49263 bp 56.03 12.26 88.53
NECEvent2014_3_3_scaffold_884 173_001_scaffold_884
Species: Bifidobacterium catenulatum (83.33%)
6 6061 bp 53.14 12.00 81.42
NECEvent2014_3_3_scaffold_2332 173_001_scaffold_2332
Species: Bifidobacterium sp. MSTE12 (100%)
2 2291 bp 57.79 11.92 81.97
NECEvent2014_3_3_scaffold_2207 173_001_scaffold_2207
Genus: Bifidobacterium (100%)
3 2418 bp 55.38 11.91 38.83
NECEvent2014_3_3_scaffold_1471 173_001_scaffold_1471
Species: Bifidobacterium dentium (100%)
3 3644 bp 59.19 11.81 83.64
NECEvent2014_3_3_scaffold_433 173_001_scaffold_433
Species: Bifidobacterium sp. MSTE12 (62.5%)
8 11297 bp 58.92 11.80 94.03
NECEvent2014_3_3_scaffold_573 173_001_scaffold_573
Species: Bifidobacterium sp. MSTE12 (50%)
6 8960 bp 56.06 11.79 79.99
NECEvent2014_3_3_scaffold_1457 173_001_scaffold_1457
Species: Bifidobacterium dentium (75%)
4 3675 bp 59.40 11.76 97.63
NECEvent2014_3_3_scaffold_1351 173_001_scaffold_1351
Species: Bifidobacterium sp. MSTE12 (66.67%)
3 3951 bp 62.31 11.73 89.90
NECEvent2014_3_3_scaffold_644 173_001_scaffold_644
Species: Bifidobacterium dentium (50%)
8 8186 bp 60.42 11.69 89.93
NECEvent2014_3_3_scaffold_487 173_001_scaffold_487
Species: Bifidobacterium sp. MSTE12 (50%)
8 10235 bp 51.98 11.68 79.40
NECEvent2014_3_3_scaffold_477 173_001_scaffold_477
Species: Bifidobacterium dentium (72.73%)
11 16380 bp 58.31 11.58 91.89
NECEvent2014_3_3_scaffold_246 173_001_scaffold_246
Species: Bifidobacterium sp. MSTE12 (85.71%)
21 23755 bp 59.32 11.32 89.32
NECEvent2014_3_3_scaffold_100 173_001_scaffold_100
Species: Bifidobacterium sp. MSTE12 (56.57%)
99 111111 bp 59.93 11.31 87.10
NECEvent2014_3_3_scaffold_1645 173_001_scaffold_1645
Species: Bifidobacterium dentium (66.67%)
3 3252 bp 59.96 11.30 90.68
NECEvent2014_3_3_scaffold_144 173_001_scaffold_144
Species: Bifidobacterium sp. MSTE12 (67.5%)
40 49192 bp 59.56 11.24 92.25
NECEvent2014_3_3_scaffold_481 173_001_scaffold_481
Species: Bifidobacterium sp. MSTE12 (60%)
10 10338 bp 55.03 11.23 94.05
NECEvent2014_3_3_scaffold_317 173_001_scaffold_317
Species: Bifidobacterium dentium (60%)
15 16315 bp 58.59 11.20 92.93
NECEvent2014_3_3_scaffold_265 173_001_scaffold_265
Genus: Bifidobacterium (95.24%)
21 22121 bp 61.36 11.08 89.61
NECEvent2014_3_3_scaffold_222 173_001_scaffold_222
Species: Bifidobacterium sp. MSTE12 (76.47%)
17 27875 bp 59.98 11.06 92.30
NECEvent2014_3_3_scaffold_230 173_001_scaffold_230
Species: Bifidobacterium sp. MSTE12 (56%)
25 31501 bp 57.33 11.02 89.85
NECEvent2014_3_3_scaffold_486 173_001_scaffold_486
Species: Bifidobacterium sp. MSTE12 (62.5%)
8 10278 bp 53.82 11.00 80.30
NECEvent2014_3_3_scaffold_327 173_001_scaffold_327
Genus: Bifidobacterium (100%)
15 15863 bp 55.52 10.98 85.99
NECEvent2014_3_3_scaffold_151 173_001_scaffold_151
Species: Bifidobacterium sp. MSTE12 (53.45%)
58 63546 bp 60.25 10.87 89.24
NECEvent2014_3_3_scaffold_180 173_001_scaffold_180
Species: Bifidobacterium sp. MSTE12 (65.71%)
35 35707 bp 59.81 10.83 87.50
NECEvent2014_3_3_scaffold_198 173_001_scaffold_198
Species: Bifidobacterium dentium (73.91%)
23 31570 bp 58.53 10.77 90.77
NECEvent2014_3_3_scaffold_848 173_001_scaffold_848
Species: Bifidobacterium sp. MSTE12 (71.43%)
7 6287 bp 61.29 10.71 99.25
NECEvent2014_3_3_scaffold_168 173_001_scaffold_168
Species: Bifidobacterium dentium (70%)
30 41156 bp 57.76 10.65 88.21
NECEvent2014_3_3_scaffold_345 173_001_scaffold_345
Species: Bifidobacterium sp. MSTE12 (72.73%)
11 14668 bp 56.97 10.63 92.18
NECEvent2014_3_3_scaffold_313 173_001_scaffold_313
Genus: Bifidobacterium (92.86%)
28 16547 bp 59.67 10.59 91.34
NECEvent2014_3_3_scaffold_2667 173_001_scaffold_2667
Species: Bifidobacterium sp. MSTE12 (66.67%)
3 2014 bp 55.91 10.58 95.48
NECEvent2014_3_3_scaffold_600 173_001_scaffold_600
Species: Bifidobacterium sp. MSTE12 (62.5%)
8 8648 bp 58.73 10.56 84.82
NECEvent2014_3_3_scaffold_544 173_001_scaffold_544
Species: Bifidobacterium sp. MSTE12 (100%)
1 9310 bp 64.56 10.52 98.93
Displaying items 1-50 of 239 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.