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SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55

SCNPILOT_EXPT_1000_BF_Sphingomonas_65_55 SCNPILOT_EXPT_1000_BF_Sphingobium_66_54
In projects: SCNPILOT_EXPT_1000_BF  |  SCN_92

Consensus taxonomy: Sphingobium  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

double SCGs are just split genes

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Partial matches in Contig names

Min-Max Range: 58.91 - 68.97

Min-Max Range: 41.87 - 60.06

Upper-bound value
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Displaying 38 items
Contig (seq size) Coding Density (%) Species Genus Order Class Phylum Domain
SCNpilot_expt_1000_bf_scaffold_144
675093 bp | 60.06 x | 67.01%
0.875426
Sphingobium sp. S...
64.67%
Sphingobium
76.50%
Sphingomonadales
90.12%
Alphaproteobacteria
94.31%
Proteobacteria
96.56%
Bacteria
97.16%
SCNpilot_expt_1000_bf_scaffold_27
522192 bp | 51.41 x | 65.80%
0.888041
Sphingobium sp. S...
58.98%
Sphingobium
70.41%
Sphingomonadales
85.51%
Alphaproteobacteria
91.63%
Proteobacteria
95.92%
Bacteria
96.73%
SCNpilot_expt_1000_bf_scaffold_130
380534 bp | 54.64 x | 66.00%
0.880494
Sphingobium sp. S...
48.36%
Sphingobium
55.82%
Sphingomonadales
73.13%
Alphaproteobacteria
82.69%
Proteobacteria
88.96%
Bacteria
93.43%
SCNpilot_expt_1000_bf_scaffold_439
244203 bp | 52.12 x | 66.09%
0.889584
Sphingobium sp. S...
62.07%
Sphingobium
68.53%
Sphingomonadales
80.17%
Alphaproteobacteria
87.50%
Proteobacteria
93.10%
Bacteria
96.55%
SCNpilot_expt_1000_bf_scaffold_115
209395 bp | 57.27 x | 66.55%
0.869906
Sphingobium sp. S...
68.23%
Sphingobium
75.00%
Sphingomonadales
90.10%
Alphaproteobacteria
94.79%
Proteobacteria
95.83%
Bacteria
98.44%
SCNpilot_expt_1000_bf_scaffold_197
185334 bp | 53.86 x | 65.37%
0.883907
Sphingobium sp. S...
37.43%
Sphingobium
58.29%
Sphingomonadales
76.47%
Alphaproteobacteria
80.21%
Proteobacteria
81.82%
Bacteria
83.42%
SCNpilot_expt_1000_bf_scaffold_246
183758 bp | 54.85 x | 65.26%
0.865481
Sphingobium sp. S...
42.33%
Sphingobium
50.31%
Sphingomonadales
82.82%
Alphaproteobacteria
87.73%
Proteobacteria
90.18%
Bacteria
93.87%
SCNpilot_expt_1000_bf_scaffold_622
179599 bp | 53.97 x | 65.16%
0.874047
Sphingobium sp. S...
45.00%
Sphingobium
64.44%
Sphingomonadales
85.00%
Alphaproteobacteria
92.78%
Proteobacteria
95.56%
Bacteria
96.67%
SCNpilot_expt_1000_bf_scaffold_234
144657 bp | 52.02 x | 65.14%
0.873763
Sphingobium sp. S...
33.85%
Sphingobium
55.38%
Sphingomonadales
70.00%
Alphaproteobacteria
77.69%
Proteobacteria
88.46%
Bacteria
90.77%
SCNpilot_expt_1000_bf_scaffold_313
142451 bp | 59.30 x | 67.11%
0.875333
Sphingobium sp. S...
73.85%
Sphingobium
82.31%
Sphingomonadales
89.23%
Alphaproteobacteria
95.38%
Proteobacteria
96.92%
Bacteria
96.92%
SCNpilot_expt_1000_bf_scaffold_536
115456 bp | 54.50 x | 64.80%
0.89273
Sphingobium sp. S...
23.28%
Sphingobium
50.00%
Sphingomonadales
80.17%
Alphaproteobacteria
85.34%
Proteobacteria
91.38%
Bacteria
93.97%
SCNpilot_expt_1000_bf_scaffold_249
113997 bp | 55.71 x | 66.69%
0.86597
Sphingobium sp. S...
68.07%
Sphingobium
70.59%
Sphingomonadales
78.99%
Alphaproteobacteria
84.87%
Proteobacteria
88.24%
Bacteria
89.92%
SCNpilot_expt_1000_bf_scaffold_661
75273 bp | 49.16 x | 65.00%
0.84883
Sphingobium sp. S...
69.84%
Sphingobium
87.30%
Sphingomonadales
92.06%
Alphaproteobacteria
93.65%
Proteobacteria
95.24%
Bacteria
95.24%
SCNpilot_expt_1000_bf_scaffold_422
74038 bp | 45.98 x | 64.03%
0.903955
Sphingobium sp. S...
60.53%
Sphingobium
73.68%
Sphingomonadales
93.42%
Alphaproteobacteria
96.05%
Proteobacteria
96.05%
Bacteria
96.05%
SCNpilot_expt_1000_bf_scaffold_445
74001 bp | 59.82 x | 64.69%
0.895366
Sphingobium chlor...
21.92%
Sphingobium
63.01%
Sphingomonadales
94.52%
Alphaproteobacteria
95.89%
Proteobacteria
97.26%
Bacteria
97.26%
SCNpilot_expt_1000_bf_scaffold_353
72915 bp | 54.81 x | 63.60%
0.884427
Sphingopyxis alas...
46.99%
Sphingopyxis
53.01%
Sphingomonadales
86.75%
Alphaproteobacteria
96.39%
Proteobacteria
96.39%
Bacteria
97.59%
SCNpilot_expt_1000_bf_scaffold_352
72465 bp | 51.03 x | 65.34%
0.919437
Sphingobium sp. S...
32.58%
Sphingobium
38.20%
Sphingomonadales
65.17%
Alphaproteobacteria
79.78%
Proteobacteria
82.02%
Bacteria
83.15%
SCNpilot_expt_1000_bf_scaffold_411
61992 bp | 54.83 x | 66.26%
0.858933
Sphingobium sp. S...
58.33%
Sphingobium
63.33%
Sphingomonadales
81.67%
Alphaproteobacteria
90.00%
Proteobacteria
91.67%
Bacteria
91.67%
SCNpilot_expt_1000_bf_scaffold_547
59578 bp | 49.48 x | 64.96%
0.849777
Sphingobium sp. S...
78.00%
Sphingobium
88.00%
Sphingomonadales
94.00%
Alphaproteobacteria
94.00%
Proteobacteria
94.00%
Bacteria
94.00%
SCNpilot_expt_1000_bf_scaffold_728
59510 bp | 45.03 x | 63.14%
0.871467
Sphingobium sp. S...
45.76%
Sphingobium
52.54%
Sphingomonadales
79.66%
Alphaproteobacteria
93.22%
Proteobacteria
94.92%
Bacteria
96.61%
SCNpilot_expt_1000_bf_scaffold_495
49419 bp | 55.52 x | 66.33%
0.865659
Sphingobium sp. S...
64.06%
Sphingobium
75.00%
Sphingomonadales
81.25%
Alphaproteobacteria
82.81%
Proteobacteria
84.38%
Bacteria
84.38%
SCNpilot_expt_1000_bf_scaffold_753
42779 bp | 46.11 x | 60.73%
0.89371
Sphingobium sp. S...
52.50%
Sphingobium
67.50%
Sphingomonadales
80.00%
Alphaproteobacteria
82.50%
Proteobacteria
97.50%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_626
39264 bp | 45.59 x | 59.90%
0.920309
Sphingobium baderi
28.57%
Sphingobium
50.00%
Sphingomonadales
76.19%
Alphaproteobacteria
83.33%
Proteobacteria
95.24%
Bacteria
95.24%
SCNpilot_expt_1000_bf_scaffold_698
34852 bp | 41.87 x | 58.91%
0.868702
unknown
41.30%
unknown
43.48%
unknown
41.30%
Alphaproteobacteria
58.70%
Proteobacteria
58.70%
Bacteria
58.70%
SCNpilot_expt_1000_bf_scaffold_1324
33006 bp | 49.11 x | 63.81%
0.886112
RHI_Sphingopyxis_...
24.00%
Sphingobium
28.00%
Sphingomonadales
68.00%
Alphaproteobacteria
72.00%
Proteobacteria
92.00%
Bacteria
92.00%
SCNpilot_expt_1000_bf_scaffold_880
26584 bp | 47.18 x | 60.81%
0.832042
Sphingopyxis sp. MC1
7.41%
Sphingobium
22.22%
Sphingomonadales
51.85%
Alphaproteobacteria
81.48%
Proteobacteria
96.30%
Bacteria
96.30%
SCNpilot_expt_1000_bf_scaffold_941
24495 bp | 56.03 x | 63.74%
0.949418
Sphingobium sp. YBL2
21.43%
Sphingobium
89.29%
Sphingomonadales
96.43%
Alphaproteobacteria
100.00%
Proteobacteria
100.00%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_1781
24112 bp | 58.92 x | 68.97%
0.866457
Sphingobium sp. S...
73.91%
Sphingobium
82.61%
Sphingomonadales
91.30%
Alphaproteobacteria
91.30%
Proteobacteria
91.30%
Bacteria
91.30%
SCNpilot_expt_1000_bf_scaffold_1002
22302 bp | 48.18 x | 64.66%
0.87463
Sphingopyxis alas...
29.17%
Sphingopyxis
29.17%
Sphingomonadales
54.17%
Alphaproteobacteria
83.33%
Proteobacteria
83.33%
Bacteria
83.33%
SCNpilot_expt_1000_bf_scaffold_1427
15544 bp | 47.38 x | 63.02%
0.795355
Hoeflea sp. BAL378
14.29%
unknown
21.43%
Sphingomonadales
42.86%
Alphaproteobacteria
85.71%
Proteobacteria
85.71%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_2270
10734 bp | 45.25 x | 66.68%
0.916434
Sphingomonas sp. ...
75.00%
Sphingomonas
75.00%
Sphingomonadales
100.00%
Alphaproteobacteria
100.00%
Proteobacteria
100.00%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_2732
9398 bp | 47.91 x | 59.77%
0.867951
Methylobacterium ...
27.27%
unknown
45.45%
Sphingomonadales
27.27%
Alphaproteobacteria
72.73%
Proteobacteria
72.73%
Bacteria
90.91%
SCNpilot_expt_1000_bf_scaffold_7526
4580 bp | 46.83 x | 59.00%
0.796507
Sphingobium sp. AP49
14.29%
Sphingobium
14.29%
Rhizobiales
42.86%
Alphaproteobacteria
71.43%
Proteobacteria
100.00%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_8950
4484 bp | 54.08 x | 62.89%
0.929973
Sphingobium yanoi...
50.00%
Sphingobium
50.00%
Sphingomonadales
100.00%
Alphaproteobacteria
100.00%
Proteobacteria
100.00%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_16727
2437 bp | 59.09 x | 61.63%
0.981124
Sphingobium chlor...
50.00%
Sphingobium
100.00%
Sphingomonadales
100.00%
Alphaproteobacteria
100.00%
Proteobacteria
100.00%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_21390
1983 bp | 56.86 x | 61.93%
0.980333
Novosphingobium l...
66.67%
Novosphingobium
66.67%
Sphingomonadales
100.00%
Alphaproteobacteria
100.00%
Proteobacteria
100.00%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_21418
1980 bp | 50.88 x | 59.24%
0.806061
Novosphingobium p...
50.00%
Novosphingobium
50.00%
Sphingomonadales
100.00%
Alphaproteobacteria
100.00%
Proteobacteria
100.00%
Bacteria
100.00%
SCNpilot_expt_1000_bf_scaffold_37728
1232 bp | 43.43 x | 62.01%
0.913149
Sphingobium sp. AP49
50.00%
Sphingobium
50.00%
Sphingomonadales
50.00%
Alphaproteobacteria
50.00%
Proteobacteria
50.00%
Bacteria
50.00%
Displaying 38 items