Consensus taxonomy: Sphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria
double SCGs are just split genes
Contig (seq size) | Coding Density (%) | Species | Genus | Order | Class | Phylum | Domain |
---|---|---|---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_144
675093 bp | 60.06 x | 67.01% |
0.875426 |
Sphingobium sp. S...
64.67%
|
Sphingobium
76.50%
|
Sphingomonadales
90.12%
|
Alphaproteobacteria
94.31%
|
Proteobacteria
96.56%
|
Bacteria
97.16%
|
SCNpilot_expt_1000_bf_scaffold_27
522192 bp | 51.41 x | 65.80% |
0.888041 |
Sphingobium sp. S...
58.98%
|
Sphingobium
70.41%
|
Sphingomonadales
85.51%
|
Alphaproteobacteria
91.63%
|
Proteobacteria
95.92%
|
Bacteria
96.73%
|
SCNpilot_expt_1000_bf_scaffold_130
380534 bp | 54.64 x | 66.00% |
0.880494 |
Sphingobium sp. S...
48.36%
|
Sphingobium
55.82%
|
Sphingomonadales
73.13%
|
Alphaproteobacteria
82.69%
|
Proteobacteria
88.96%
|
Bacteria
93.43%
|
SCNpilot_expt_1000_bf_scaffold_439
244203 bp | 52.12 x | 66.09% |
0.889584 |
Sphingobium sp. S...
62.07%
|
Sphingobium
68.53%
|
Sphingomonadales
80.17%
|
Alphaproteobacteria
87.50%
|
Proteobacteria
93.10%
|
Bacteria
96.55%
|
SCNpilot_expt_1000_bf_scaffold_115
209395 bp | 57.27 x | 66.55% |
0.869906 |
Sphingobium sp. S...
68.23%
|
Sphingobium
75.00%
|
Sphingomonadales
90.10%
|
Alphaproteobacteria
94.79%
|
Proteobacteria
95.83%
|
Bacteria
98.44%
|
SCNpilot_expt_1000_bf_scaffold_197
185334 bp | 53.86 x | 65.37% |
0.883907 |
Sphingobium sp. S...
37.43%
|
Sphingobium
58.29%
|
Sphingomonadales
76.47%
|
Alphaproteobacteria
80.21%
|
Proteobacteria
81.82%
|
Bacteria
83.42%
|
SCNpilot_expt_1000_bf_scaffold_246
183758 bp | 54.85 x | 65.26% |
0.865481 |
Sphingobium sp. S...
42.33%
|
Sphingobium
50.31%
|
Sphingomonadales
82.82%
|
Alphaproteobacteria
87.73%
|
Proteobacteria
90.18%
|
Bacteria
93.87%
|
SCNpilot_expt_1000_bf_scaffold_622
179599 bp | 53.97 x | 65.16% |
0.874047 |
Sphingobium sp. S...
45.00%
|
Sphingobium
64.44%
|
Sphingomonadales
85.00%
|
Alphaproteobacteria
92.78%
|
Proteobacteria
95.56%
|
Bacteria
96.67%
|
SCNpilot_expt_1000_bf_scaffold_234
144657 bp | 52.02 x | 65.14% |
0.873763 |
Sphingobium sp. S...
33.85%
|
Sphingobium
55.38%
|
Sphingomonadales
70.00%
|
Alphaproteobacteria
77.69%
|
Proteobacteria
88.46%
|
Bacteria
90.77%
|
SCNpilot_expt_1000_bf_scaffold_313
142451 bp | 59.30 x | 67.11% |
0.875333 |
Sphingobium sp. S...
73.85%
|
Sphingobium
82.31%
|
Sphingomonadales
89.23%
|
Alphaproteobacteria
95.38%
|
Proteobacteria
96.92%
|
Bacteria
96.92%
|
SCNpilot_expt_1000_bf_scaffold_536
115456 bp | 54.50 x | 64.80% |
0.89273 |
Sphingobium sp. S...
23.28%
|
Sphingobium
50.00%
|
Sphingomonadales
80.17%
|
Alphaproteobacteria
85.34%
|
Proteobacteria
91.38%
|
Bacteria
93.97%
|
SCNpilot_expt_1000_bf_scaffold_249
113997 bp | 55.71 x | 66.69% |
0.86597 |
Sphingobium sp. S...
68.07%
|
Sphingobium
70.59%
|
Sphingomonadales
78.99%
|
Alphaproteobacteria
84.87%
|
Proteobacteria
88.24%
|
Bacteria
89.92%
|
SCNpilot_expt_1000_bf_scaffold_661
75273 bp | 49.16 x | 65.00% |
0.84883 |
Sphingobium sp. S...
69.84%
|
Sphingobium
87.30%
|
Sphingomonadales
92.06%
|
Alphaproteobacteria
93.65%
|
Proteobacteria
95.24%
|
Bacteria
95.24%
|
SCNpilot_expt_1000_bf_scaffold_422
74038 bp | 45.98 x | 64.03% |
0.903955 |
Sphingobium sp. S...
60.53%
|
Sphingobium
73.68%
|
Sphingomonadales
93.42%
|
Alphaproteobacteria
96.05%
|
Proteobacteria
96.05%
|
Bacteria
96.05%
|
SCNpilot_expt_1000_bf_scaffold_445
74001 bp | 59.82 x | 64.69% |
0.895366 |
Sphingobium chlor...
21.92%
|
Sphingobium
63.01%
|
Sphingomonadales
94.52%
|
Alphaproteobacteria
95.89%
|
Proteobacteria
97.26%
|
Bacteria
97.26%
|
SCNpilot_expt_1000_bf_scaffold_353
72915 bp | 54.81 x | 63.60% |
0.884427 |
Sphingopyxis alas...
46.99%
|
Sphingopyxis
53.01%
|
Sphingomonadales
86.75%
|
Alphaproteobacteria
96.39%
|
Proteobacteria
96.39%
|
Bacteria
97.59%
|
SCNpilot_expt_1000_bf_scaffold_352
72465 bp | 51.03 x | 65.34% |
0.919437 |
Sphingobium sp. S...
32.58%
|
Sphingobium
38.20%
|
Sphingomonadales
65.17%
|
Alphaproteobacteria
79.78%
|
Proteobacteria
82.02%
|
Bacteria
83.15%
|
SCNpilot_expt_1000_bf_scaffold_411
61992 bp | 54.83 x | 66.26% |
0.858933 |
Sphingobium sp. S...
58.33%
|
Sphingobium
63.33%
|
Sphingomonadales
81.67%
|
Alphaproteobacteria
90.00%
|
Proteobacteria
91.67%
|
Bacteria
91.67%
|
SCNpilot_expt_1000_bf_scaffold_547
59578 bp | 49.48 x | 64.96% |
0.849777 |
Sphingobium sp. S...
78.00%
|
Sphingobium
88.00%
|
Sphingomonadales
94.00%
|
Alphaproteobacteria
94.00%
|
Proteobacteria
94.00%
|
Bacteria
94.00%
|
SCNpilot_expt_1000_bf_scaffold_728
59510 bp | 45.03 x | 63.14% |
0.871467 |
Sphingobium sp. S...
45.76%
|
Sphingobium
52.54%
|
Sphingomonadales
79.66%
|
Alphaproteobacteria
93.22%
|
Proteobacteria
94.92%
|
Bacteria
96.61%
|
SCNpilot_expt_1000_bf_scaffold_495
49419 bp | 55.52 x | 66.33% |
0.865659 |
Sphingobium sp. S...
64.06%
|
Sphingobium
75.00%
|
Sphingomonadales
81.25%
|
Alphaproteobacteria
82.81%
|
Proteobacteria
84.38%
|
Bacteria
84.38%
|
SCNpilot_expt_1000_bf_scaffold_753
42779 bp | 46.11 x | 60.73% |
0.89371 |
Sphingobium sp. S...
52.50%
|
Sphingobium
67.50%
|
Sphingomonadales
80.00%
|
Alphaproteobacteria
82.50%
|
Proteobacteria
97.50%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_626
39264 bp | 45.59 x | 59.90% |
0.920309 |
Sphingobium baderi
28.57%
|
Sphingobium
50.00%
|
Sphingomonadales
76.19%
|
Alphaproteobacteria
83.33%
|
Proteobacteria
95.24%
|
Bacteria
95.24%
|
SCNpilot_expt_1000_bf_scaffold_698
34852 bp | 41.87 x | 58.91% |
0.868702 |
unknown
41.30%
|
unknown
43.48%
|
unknown
41.30%
|
Alphaproteobacteria
58.70%
|
Proteobacteria
58.70%
|
Bacteria
58.70%
|
SCNpilot_expt_1000_bf_scaffold_1324
33006 bp | 49.11 x | 63.81% |
0.886112 |
RHI_Sphingopyxis_...
24.00%
|
Sphingobium
28.00%
|
Sphingomonadales
68.00%
|
Alphaproteobacteria
72.00%
|
Proteobacteria
92.00%
|
Bacteria
92.00%
|
SCNpilot_expt_1000_bf_scaffold_880
26584 bp | 47.18 x | 60.81% |
0.832042 |
Sphingopyxis sp. MC1
7.41%
|
Sphingobium
22.22%
|
Sphingomonadales
51.85%
|
Alphaproteobacteria
81.48%
|
Proteobacteria
96.30%
|
Bacteria
96.30%
|
SCNpilot_expt_1000_bf_scaffold_941
24495 bp | 56.03 x | 63.74% |
0.949418 |
Sphingobium sp. YBL2
21.43%
|
Sphingobium
89.29%
|
Sphingomonadales
96.43%
|
Alphaproteobacteria
100.00%
|
Proteobacteria
100.00%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_1781
24112 bp | 58.92 x | 68.97% |
0.866457 |
Sphingobium sp. S...
73.91%
|
Sphingobium
82.61%
|
Sphingomonadales
91.30%
|
Alphaproteobacteria
91.30%
|
Proteobacteria
91.30%
|
Bacteria
91.30%
|
SCNpilot_expt_1000_bf_scaffold_1002
22302 bp | 48.18 x | 64.66% |
0.87463 |
Sphingopyxis alas...
29.17%
|
Sphingopyxis
29.17%
|
Sphingomonadales
54.17%
|
Alphaproteobacteria
83.33%
|
Proteobacteria
83.33%
|
Bacteria
83.33%
|
SCNpilot_expt_1000_bf_scaffold_1427
15544 bp | 47.38 x | 63.02% |
0.795355 |
Hoeflea sp. BAL378
14.29%
|
unknown
21.43%
|
Sphingomonadales
42.86%
|
Alphaproteobacteria
85.71%
|
Proteobacteria
85.71%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_2270
10734 bp | 45.25 x | 66.68% |
0.916434 |
Sphingomonas sp. ...
75.00%
|
Sphingomonas
75.00%
|
Sphingomonadales
100.00%
|
Alphaproteobacteria
100.00%
|
Proteobacteria
100.00%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_2732
9398 bp | 47.91 x | 59.77% |
0.867951 |
Methylobacterium ...
27.27%
|
unknown
45.45%
|
Sphingomonadales
27.27%
|
Alphaproteobacteria
72.73%
|
Proteobacteria
72.73%
|
Bacteria
90.91%
|
SCNpilot_expt_1000_bf_scaffold_7526
4580 bp | 46.83 x | 59.00% |
0.796507 |
Sphingobium sp. AP49
14.29%
|
Sphingobium
14.29%
|
Rhizobiales
42.86%
|
Alphaproteobacteria
71.43%
|
Proteobacteria
100.00%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_8950
4484 bp | 54.08 x | 62.89% |
0.929973 |
Sphingobium yanoi...
50.00%
|
Sphingobium
50.00%
|
Sphingomonadales
100.00%
|
Alphaproteobacteria
100.00%
|
Proteobacteria
100.00%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_16727
2437 bp | 59.09 x | 61.63% |
0.981124 |
Sphingobium chlor...
50.00%
|
Sphingobium
100.00%
|
Sphingomonadales
100.00%
|
Alphaproteobacteria
100.00%
|
Proteobacteria
100.00%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_21390
1983 bp | 56.86 x | 61.93% |
0.980333 |
Novosphingobium l...
66.67%
|
Novosphingobium
66.67%
|
Sphingomonadales
100.00%
|
Alphaproteobacteria
100.00%
|
Proteobacteria
100.00%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_21418
1980 bp | 50.88 x | 59.24% |
0.806061 |
Novosphingobium p...
50.00%
|
Novosphingobium
50.00%
|
Sphingomonadales
100.00%
|
Alphaproteobacteria
100.00%
|
Proteobacteria
100.00%
|
Bacteria
100.00%
|
SCNpilot_expt_1000_bf_scaffold_37728
1232 bp | 43.43 x | 62.01% |
0.913149 |
Sphingobium sp. AP49
50.00%
|
Sphingobium
50.00%
|
Sphingomonadales
50.00%
|
Alphaproteobacteria
50.00%
|
Proteobacteria
50.00%
|
Bacteria
50.00%
|