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SCNPILOT_EXPT_1000_BF_Shinella_65_6

SCNPILOT_EXPT_1000_BF_Shinella_sp__DD12_65_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Shinella sp. DD12  →  Shinella  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase

Displaying items 51-100 of 914 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_9976
Species: Shinella sp. DD12 (87.5%)
8 7053 bp 66.70 7.27 84.94
SCNpilot_expt_1000_bf_scaffold_8157
Species: Shinella sp. DD12 (100%)
4 4301 bp 65.80 7.27 92.00
SCNpilot_expt_1000_bf_scaffold_7340
Species: Shinella sp. DD12 (75%)
8 7468 bp 67.38 7.26 94.44
SCNpilot_expt_1000_bf_scaffold_5340
Species: Shinella sp. DD12 (88.89%)
18 13775 bp 64.54 7.26 86.68
SCNpilot_expt_1000_bf_scaffold_3649
Species: Shinella sp. DD12 (93.33%)
30 29604 bp 66.19 7.24 92.63
SCNpilot_expt_1000_bf_scaffold_2597
Species: Shinella sp. DD12 (95.24%)
21 22030 bp 66.09 7.24 83.10
SCNpilot_expt_1000_bf_scaffold_15502
Species: Shinella sp. DD12 (66.67%)
3 2595 bp 64.08 7.23 92.14
SCNpilot_expt_1000_bf_scaffold_6330
Species: Shinella sp. DD12 (50%)
4 5194 bp 64.84 7.22 85.60
SCNpilot_expt_1000_bf_scaffold_17251
Species: Shinella sp. DD12 (100%)
3 2878 bp 70.92 7.21 99.65
SCNpilot_expt_1000_bf_scaffold_6987
Species: Shinella sp. DD12 (71.43%)
7 6654 bp 65.64 7.21 85.08
SCNpilot_expt_1000_bf_scaffold_66190
Species: Shinella sp. DD12 (50%)
2 1041 bp 66.76 7.20 92.80
SCNpilot_expt_1000_bf_scaffold_15094
Species: Shinella sp. DD12 (88.89%)
9 5467 bp 67.17 7.18 88.95
SCNpilot_expt_1000_bf_scaffold_65295
Species: Shinella sp. DD12 (50%)
2 1010 bp 56.83 7.18 98.61
SCNpilot_expt_1000_bf_scaffold_1697
Species: Shinella sp. DD12 (61.54%)
13 17089 bp 65.95 7.18 85.74
SCNpilot_expt_1000_bf_scaffold_4680
Species: Shinella sp. DD12 (100%)
7 6450 bp 65.88 7.17 93.40
SCNpilot_expt_1000_bf_scaffold_2774
Species: Shinella sp. DD12 (95.83%)
24 25762 bp 65.27 7.14 81.90
SCNpilot_expt_1000_bf_scaffold_2844
Species: Shinella sp. DD12 (87.5%)
16 13567 bp 67.89 7.13 93.56
SCNpilot_expt_1000_bf_scaffold_2346
Species: Shinella sp. DD12 (82.76%)
29 26770 bp 66.54 7.13 81.79
SCNpilot_expt_1000_bf_scaffold_11016
Species: Shinella sp. DD12 (100%)
10 8165 bp 65.81 7.13 94.61
SCNpilot_expt_1000_bf_scaffold_3161
Species: Shinella sp. DD12 (100%)
11 9585 bp 64.58 7.12 86.42
SCNpilot_expt_1000_bf_scaffold_6423
Species: Shinella sp. DD12 (71.43%)
14 14440 bp 66.30 7.12 85.97
SCNpilot_expt_1000_bf_scaffold_8909
Species: Shinella sp. DD12 (75%)
20 20577 bp 65.00 7.12 64.99
SCNpilot_expt_1000_bf_scaffold_3187
Species: Shinella sp. DD12 (82.76%)
29 31636 bp 66.83 7.11 89.81
SCNpilot_expt_1000_bf_scaffold_26917
Species: Shinella sp. DD12 (100%)
4 2076 bp 64.11 7.11 97.11
SCNpilot_expt_1000_bf_scaffold_5285
Species: Shinella sp. DD12 (92.86%)
14 11406 bp 66.57 7.10 90.95
SCNpilot_expt_1000_bf_scaffold_3846
Species: Shinella sp. DD12 (88.89%)
18 14744 bp 65.97 7.09 85.26
SCNpilot_expt_1000_bf_scaffold_1889
Species: Shinella sp. DD12 (100%)
26 19670 bp 65.36 7.09 88.46
SCNpilot_expt_1000_bf_scaffold_4003
Species: Shinella sp. DD12 (91.67%)
24 21092 bp 66.45 7.08 84.84
SCNpilot_expt_1000_bf_scaffold_10511
Order: Rhizobiales (55.56%)
9 5475 bp 62.26 7.08 89.04
SCNpilot_expt_1000_bf_scaffold_4349
Species: Shinella sp. DD12 (92.31%)
13 16577 bp 65.25 7.06 86.90
SCNpilot_expt_1000_bf_scaffold_1868
Species: Shinella sp. DD12 (93.33%)
15 14156 bp 66.54 7.06 82.61
SCNpilot_expt_1000_bf_scaffold_6024
Species: Shinella sp. DD12 (71.43%)
7 6759 bp 66.49 7.06 94.54
SCNpilot_expt_1000_bf_scaffold_23792
Species: Shinella sp. DD12 (100%)
1 1809 bp 62.85 7.05 99.83
SCNpilot_expt_1000_bf_scaffold_4066
Species: Shinella sp. DD12 (80%)
10 11215 bp 65.98 7.04 81.69
SCNpilot_expt_1000_bf_scaffold_7470
Species: Shinella sp. DD12 (75%)
28 28534 bp 64.80 7.04 76.65
SCNpilot_expt_1000_bf_scaffold_4153
Species: Shinella sp. DD12 (89.29%)
28 22118 bp 66.61 7.01 81.76
SCNpilot_expt_1000_bf_scaffold_25990
Species: Shinella sp. DD12 (80%)
5 3499 bp 63.48 7.00 81.28
SCNpilot_expt_1000_bf_scaffold_3406
Order: Rhizobiales (100%)
8 8328 bp 66.45 6.99 96.79
SCNpilot_expt_1000_bf_scaffold_9526
Species: Shinella sp. DD12 (100%)
12 11187 bp 68.06 6.99 76.83
SCNpilot_expt_1000_bf_scaffold_5021
Genus: Rhizobium (57.14%)
21 18084 bp 62.53 6.98 86.18
SCNpilot_expt_1000_bf_scaffold_4709
Class: Alphaproteobacteria (61.9%)
21 18053 bp 65.30 6.98 88.66
SCNpilot_expt_1000_bf_scaffold_2802
Species: Shinella sp. DD12 (92.86%)
14 9219 bp 63.92 6.97 84.25
SCNpilot_expt_1000_bf_scaffold_3301
Species: Ketogulonicigenium vulgare (92.31%)
13 8219 bp 60.06 6.97 79.64
SCNpilot_expt_1000_bf_scaffold_3093
Order: Rhizobiales (90%)
20 18895 bp 67.94 6.95 88.09
SCNpilot_expt_1000_bf_scaffold_2123
Species: Shinella sp. DD12 (61.9%)
21 20891 bp 65.90 6.95 90.02
SCNpilot_expt_1000_bf_scaffold_1731
Species: Shinella sp. DD12 (95%)
20 21361 bp 64.42 6.95 85.85
SCNpilot_expt_1000_bf_scaffold_9907
Species: Shinella sp. DD12 (82.35%)
17 12769 bp 64.88 6.93 84.51
SCNpilot_expt_1000_bf_scaffold_18449
Species: Shinella sp. DD12 (80%)
5 3643 bp 64.51 6.93 87.87
SCNpilot_expt_1000_bf_scaffold_10351
Species: Shinella sp. DD12 (76.92%)
13 11434 bp 66.12 6.93 79.50
SCNpilot_expt_1000_bf_scaffold_4814
Species: Shinella sp. DD12 (71.43%)
7 7623 bp 64.12 6.92 84.34
Displaying items 51-100 of 914 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.