Consensus taxonomy: Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria
from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase
contig | # features | sequence size | GC content (%) | Cov | Coding Density (%) | |
---|---|---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_9976
Species:
Shinella sp. DD12 (87.5%)
|
8 | 7053 bp | 66.70 | 7.27 | 84.94 | |
SCNpilot_expt_1000_bf_scaffold_8157
Species:
Shinella sp. DD12 (100%)
|
4 | 4301 bp | 65.80 | 7.27 | 92.00 | |
SCNpilot_expt_1000_bf_scaffold_7340
Species:
Shinella sp. DD12 (75%)
|
8 | 7468 bp | 67.38 | 7.26 | 94.44 | |
SCNpilot_expt_1000_bf_scaffold_5340
Species:
Shinella sp. DD12 (88.89%)
|
18 | 13775 bp | 64.54 | 7.26 | 86.68 | |
SCNpilot_expt_1000_bf_scaffold_3649
Species:
Shinella sp. DD12 (93.33%)
|
30 | 29604 bp | 66.19 | 7.24 | 92.63 | |
SCNpilot_expt_1000_bf_scaffold_2597
Species:
Shinella sp. DD12 (95.24%)
|
21 | 22030 bp | 66.09 | 7.24 | 83.10 | |
SCNpilot_expt_1000_bf_scaffold_15502
Species:
Shinella sp. DD12 (66.67%)
|
3 | 2595 bp | 64.08 | 7.23 | 92.14 | |
SCNpilot_expt_1000_bf_scaffold_6330
Species:
Shinella sp. DD12 (50%)
|
4 | 5194 bp | 64.84 | 7.22 | 85.60 | |
SCNpilot_expt_1000_bf_scaffold_17251
Species:
Shinella sp. DD12 (100%)
|
3 | 2878 bp | 70.92 | 7.21 | 99.65 | |
SCNpilot_expt_1000_bf_scaffold_6987
Species:
Shinella sp. DD12 (71.43%)
|
7 | 6654 bp | 65.64 | 7.21 | 85.08 | |
SCNpilot_expt_1000_bf_scaffold_66190
Species:
Shinella sp. DD12 (50%)
|
2 | 1041 bp | 66.76 | 7.20 | 92.80 | |
SCNpilot_expt_1000_bf_scaffold_15094
Species:
Shinella sp. DD12 (88.89%)
|
9 | 5467 bp | 67.17 | 7.18 | 88.95 | |
SCNpilot_expt_1000_bf_scaffold_65295
Species:
Shinella sp. DD12 (50%)
|
2 | 1010 bp | 56.83 | 7.18 | 98.61 | |
SCNpilot_expt_1000_bf_scaffold_1697
Species:
Shinella sp. DD12 (61.54%)
|
13 | 17089 bp | 65.95 | 7.18 | 85.74 | |
SCNpilot_expt_1000_bf_scaffold_4680
Species:
Shinella sp. DD12 (100%)
|
7 | 6450 bp | 65.88 | 7.17 | 93.40 | |
SCNpilot_expt_1000_bf_scaffold_2774
Species:
Shinella sp. DD12 (95.83%)
|
24 | 25762 bp | 65.27 | 7.14 | 81.90 | |
SCNpilot_expt_1000_bf_scaffold_2844
Species:
Shinella sp. DD12 (87.5%)
|
16 | 13567 bp | 67.89 | 7.13 | 93.56 | |
SCNpilot_expt_1000_bf_scaffold_2346
Species:
Shinella sp. DD12 (82.76%)
|
29 | 26770 bp | 66.54 | 7.13 | 81.79 | |
SCNpilot_expt_1000_bf_scaffold_11016
Species:
Shinella sp. DD12 (100%)
|
10 | 8165 bp | 65.81 | 7.13 | 94.61 | |
SCNpilot_expt_1000_bf_scaffold_3161
Species:
Shinella sp. DD12 (100%)
|
11 | 9585 bp | 64.58 | 7.12 | 86.42 | |
SCNpilot_expt_1000_bf_scaffold_6423
Species:
Shinella sp. DD12 (71.43%)
|
14 | 14440 bp | 66.30 | 7.12 | 85.97 | |
SCNpilot_expt_1000_bf_scaffold_8909
Species:
Shinella sp. DD12 (75%)
|
20 | 20577 bp | 65.00 | 7.12 | 64.99 | |
SCNpilot_expt_1000_bf_scaffold_3187
Species:
Shinella sp. DD12 (82.76%)
|
29 | 31636 bp | 66.83 | 7.11 | 89.81 | |
SCNpilot_expt_1000_bf_scaffold_26917
Species:
Shinella sp. DD12 (100%)
|
4 | 2076 bp | 64.11 | 7.11 | 97.11 | |
SCNpilot_expt_1000_bf_scaffold_5285
Species:
Shinella sp. DD12 (92.86%)
|
14 | 11406 bp | 66.57 | 7.10 | 90.95 | |
SCNpilot_expt_1000_bf_scaffold_3846
Species:
Shinella sp. DD12 (88.89%)
|
18 | 14744 bp | 65.97 | 7.09 | 85.26 | |
SCNpilot_expt_1000_bf_scaffold_1889
Species:
Shinella sp. DD12 (100%)
|
26 | 19670 bp | 65.36 | 7.09 | 88.46 | |
SCNpilot_expt_1000_bf_scaffold_4003
Species:
Shinella sp. DD12 (91.67%)
|
24 | 21092 bp | 66.45 | 7.08 | 84.84 | |
SCNpilot_expt_1000_bf_scaffold_10511
Order:
Rhizobiales (55.56%)
|
9 | 5475 bp | 62.26 | 7.08 | 89.04 | |
SCNpilot_expt_1000_bf_scaffold_4349
Species:
Shinella sp. DD12 (92.31%)
|
13 | 16577 bp | 65.25 | 7.06 | 86.90 | |
SCNpilot_expt_1000_bf_scaffold_1868
Species:
Shinella sp. DD12 (93.33%)
|
15 | 14156 bp | 66.54 | 7.06 | 82.61 | |
SCNpilot_expt_1000_bf_scaffold_6024
Species:
Shinella sp. DD12 (71.43%)
|
7 | 6759 bp | 66.49 | 7.06 | 94.54 | |
SCNpilot_expt_1000_bf_scaffold_23792
Species:
Shinella sp. DD12 (100%)
|
1 | 1809 bp | 62.85 | 7.05 | 99.83 | |
SCNpilot_expt_1000_bf_scaffold_4066
Species:
Shinella sp. DD12 (80%)
|
10 | 11215 bp | 65.98 | 7.04 | 81.69 | |
SCNpilot_expt_1000_bf_scaffold_7470
Species:
Shinella sp. DD12 (75%)
|
28 | 28534 bp | 64.80 | 7.04 | 76.65 | |
SCNpilot_expt_1000_bf_scaffold_4153
Species:
Shinella sp. DD12 (89.29%)
|
28 | 22118 bp | 66.61 | 7.01 | 81.76 | |
SCNpilot_expt_1000_bf_scaffold_25990
Species:
Shinella sp. DD12 (80%)
|
5 | 3499 bp | 63.48 | 7.00 | 81.28 | |
SCNpilot_expt_1000_bf_scaffold_3406
Order:
Rhizobiales (100%)
|
8 | 8328 bp | 66.45 | 6.99 | 96.79 | |
SCNpilot_expt_1000_bf_scaffold_9526
Species:
Shinella sp. DD12 (100%)
|
12 | 11187 bp | 68.06 | 6.99 | 76.83 | |
SCNpilot_expt_1000_bf_scaffold_5021
Genus:
Rhizobium (57.14%)
|
21 | 18084 bp | 62.53 | 6.98 | 86.18 | |
SCNpilot_expt_1000_bf_scaffold_4709
Class:
Alphaproteobacteria (61.9%)
|
21 | 18053 bp | 65.30 | 6.98 | 88.66 | |
SCNpilot_expt_1000_bf_scaffold_2802
Species:
Shinella sp. DD12 (92.86%)
|
14 | 9219 bp | 63.92 | 6.97 | 84.25 | |
SCNpilot_expt_1000_bf_scaffold_3301
Species:
Ketogulonicigenium vulgare (92.31%)
|
13 | 8219 bp | 60.06 | 6.97 | 79.64 | |
SCNpilot_expt_1000_bf_scaffold_3093
Order:
Rhizobiales (90%)
|
20 | 18895 bp | 67.94 | 6.95 | 88.09 | |
SCNpilot_expt_1000_bf_scaffold_2123
Species:
Shinella sp. DD12 (61.9%)
|
21 | 20891 bp | 65.90 | 6.95 | 90.02 | |
SCNpilot_expt_1000_bf_scaffold_1731
Species:
Shinella sp. DD12 (95%)
|
20 | 21361 bp | 64.42 | 6.95 | 85.85 | |
SCNpilot_expt_1000_bf_scaffold_9907
Species:
Shinella sp. DD12 (82.35%)
|
17 | 12769 bp | 64.88 | 6.93 | 84.51 | |
SCNpilot_expt_1000_bf_scaffold_18449
Species:
Shinella sp. DD12 (80%)
|
5 | 3643 bp | 64.51 | 6.93 | 87.87 | |
SCNpilot_expt_1000_bf_scaffold_10351
Species:
Shinella sp. DD12 (76.92%)
|
13 | 11434 bp | 66.12 | 6.93 | 79.50 | |
SCNpilot_expt_1000_bf_scaffold_4814
Species:
Shinella sp. DD12 (71.43%)
|
7 | 7623 bp | 64.12 | 6.92 | 84.34 |