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SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41

In projects: SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK

Properties

Avg. coverage: 41.21 Longest contig: 253.90 Kbp Bin length: 3.20 Mbp GC content: 62.03 %
Contigs count: 66 Features count: 3249 rRNAs count: 1 tRNAs count: 41

Genome completeness

near complete RP 50 / 55 BSCG 49 / 51 MC: 3 ASCG 11 / 38
Displaying items 1-50 of 66 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_3847
Order: Sphingomonadales (50%)
8 6105 bp 62.23 36.83 83.72
scnpilot_solids2_trim150_scaffold_3210
Class: Alphaproteobacteria (87.5%)
8 7487 bp 61.17 38.19 91.44
scnpilot_solids2_trim150_scaffold_6417
Species: Mesorhizobium loti (50%)
4 3392 bp 61.38 38.38 96.14
scnpilot_solids2_trim150_scaffold_359
Class: Alphaproteobacteria (60.42%)
48 47564 bp 59.58 38.76 92.40
scnpilot_solids2_trim150_scaffold_1529
Class: Alphaproteobacteria (77.78%)
18 15569 bp 63.83 38.78 94.48
scnpilot_solids2_trim150_scaffold_496
Class: Alphaproteobacteria (53.66%)
82 73456 bp 59.79 39.12 91.92
scnpilot_solids2_trim150_scaffold_376
Class: Alphaproteobacteria (78.13%)
65 70099 bp 61.83 39.34 91.14
scnpilot_solids2_trim150_scaffold_1327
Class: Alphaproteobacteria (70.59%)
17 16931 bp 61.41 39.68 93.01
scnpilot_solids2_trim150_scaffold_155
Class: Alphaproteobacteria (54.7%)
119 101544 bp 60.59 39.71 93.86
scnpilot_solids2_trim150_scaffold_1318
Class: Alphaproteobacteria (69.57%)
23 20257 bp 62.89 40.03 88.37
scnpilot_solids2_trim150_scaffold_1091
Class: Alphaproteobacteria (79.49%)
39 38787 bp 62.64 40.03 88.75
scnpilot_solids2_trim150_scaffold_228
Class: Alphaproteobacteria (67.05%)
89 86853 bp 61.52 40.22 90.33
scnpilot_solids2_trim150_scaffold_1763
Species: alpha proteobacterium U9-1i (55.56%)
9 13154 bp 59.67 40.28 91.04
scnpilot_solids2_trim150_scaffold_380
Class: Alphaproteobacteria (83.33%)
98 91544 bp 63.92 40.29 92.04
scnpilot_solids2_trim150_scaffold_935
Class: Alphaproteobacteria (54.88%)
82 85739 bp 60.44 40.37 92.54
scnpilot_solids2_trim150_scaffold_1164
Class: Alphaproteobacteria (72.73%)
24 19515 bp 62.27 40.46 95.66
scnpilot_solids2_trim150_scaffold_350
Class: Alphaproteobacteria (71.6%)
257 253904 bp 62.18 40.46 90.45
scnpilot_solids2_trim150_scaffold_837
Class: Alphaproteobacteria (75%)
100 92124 bp 62.60 40.65 90.78
scnpilot_solids2_trim150_scaffold_657
Class: Alphaproteobacteria (75.56%)
46 49751 bp 60.71 40.68 86.10
scnpilot_solids2_trim150_scaffold_521
Class: Alphaproteobacteria (88.24%)
34 35606 bp 61.33 40.69 93.36
scnpilot_solids2_trim150_scaffold_1913
Class: Alphaproteobacteria (66.67%)
12 12329 bp 61.42 40.72 93.02
scnpilot_solids2_trim150_scaffold_721
Class: Alphaproteobacteria (70.97%)
31 32467 bp 61.11 40.80 90.79
scnpilot_solids2_trim150_scaffold_349
Class: Alphaproteobacteria (73.83%)
152 146566 bp 63.00 40.90 91.27
scnpilot_solids2_trim150_scaffold_2666
Class: Alphaproteobacteria (90.48%)
21 20685 bp 62.52 40.91 92.59
scnpilot_solids2_trim150_scaffold_832
Class: Alphaproteobacteria (84.62%)
81 88934 bp 60.14 40.95 93.46
scnpilot_solids2_trim150_scaffold_273
Class: Alphaproteobacteria (69.88%)
83 82836 bp 62.39 41.02 93.18
scnpilot_solids2_trim150_scaffold_582
Class: Alphaproteobacteria (80%)
50 49271 bp 62.85 41.03 94.70
scnpilot_solids2_trim150_scaffold_2199
Class: Alphaproteobacteria (52.63%)
19 17825 bp 62.12 41.11 89.66
scnpilot_solids2_trim150_scaffold_284
Class: Alphaproteobacteria (68.06%)
73 75658 bp 61.63 41.20 90.24
scnpilot_solids2_trim150_scaffold_2150
Class: Alphaproteobacteria (63.16%)
19 20939 bp 61.67 41.23 88.40
scnpilot_solids2_trim150_scaffold_2329
Class: Alphaproteobacteria (60%)
15 10293 bp 62.42 41.29 86.36
scnpilot_solids2_trim150_scaffold_1047
Class: Alphaproteobacteria (86.67%)
45 46589 bp 60.72 41.32 89.86
scnpilot_solids2_trim150_scaffold_910
Class: Alphaproteobacteria (59.09%)
22 23225 bp 62.58 41.37 92.69
scnpilot_solids2_trim150_scaffold_1700
Order: Rhizobiales (53.85%)
14 13630 bp 62.64 41.37 91.69
scnpilot_solids2_trim150_scaffold_419
Class: Alphaproteobacteria (77.27%)
45 41841 bp 62.96 41.48 91.00
scnpilot_solids2_trim150_scaffold_1643
Class: Alphaproteobacteria (77.5%)
80 70795 bp 63.02 41.64 89.71
scnpilot_solids2_trim150_scaffold_7974
Order: Rhizobiales (66.67%)
3 3352 bp 63.25 41.66 98.09
scnpilot_solids2_trim150_scaffold_569
Class: Alphaproteobacteria (80.77%)
52 51294 bp 61.93 41.69 94.27
scnpilot_solids2_trim150_scaffold_3622
Class: Alphaproteobacteria (100%)
5 6539 bp 61.84 41.70 97.72
scnpilot_solids2_trim150_scaffold_1803
Class: Alphaproteobacteria (80%)
46 44497 bp 62.75 41.74 87.53
scnpilot_solids2_trim150_scaffold_383
Class: Alphaproteobacteria (72.73%)
188 181089 bp 62.16 41.84 91.44
scnpilot_solids2_trim150_scaffold_2008
Class: Alphaproteobacteria (61.11%)
18 17948 bp 62.46 41.90 94.54
scnpilot_solids2_trim150_scaffold_487
Class: Alphaproteobacteria (83.33%)
36 38087 bp 63.07 41.90 92.61
scnpilot_solids2_trim150_scaffold_290
Class: Alphaproteobacteria (74.38%)
161 153133 bp 62.54 41.91 90.08
scnpilot_solids2_trim150_scaffold_1285
Class: Alphaproteobacteria (61.9%)
21 25347 bp 61.26 41.94 92.93
scnpilot_solids2_trim150_scaffold_567
Class: Alphaproteobacteria (79.25%)
54 56038 bp 62.22 41.96 93.78
scnpilot_solids2_trim150_scaffold_188
Class: Alphaproteobacteria (71.82%)
111 122821 bp 62.51 41.97 89.54
scnpilot_solids2_trim150_scaffold_1392
Class: Alphaproteobacteria (73.53%)
35 34852 bp 61.87 42.01 86.09
scnpilot_solids2_trim150_scaffold_915
Class: Alphaproteobacteria (76.6%)
47 39219 bp 63.25 42.02 88.04
scnpilot_solids2_trim150_scaffold_682
Class: Alphaproteobacteria (84.62%)
27 28606 bp 61.36 42.04 92.91
Displaying items 1-50 of 66 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.