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SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK

Properties

Avg. coverage: 11.36 Longest contig: 223.48 Kbp Bin length: 5.14 Mbp GC content: 42.47 %
Contigs count: 122 Features count: 4418 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Displaying items 51-100 of 122 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_429
Phylum: Bacteroidetes (59.46%)
37 36639 bp 41.68 11.52 87.73
scnpilot_solids1_trim150_scaffold_175
Order: Sphingobacteriales (53.7%)
55 65186 bp 42.24 11.17 87.77
scnpilot_solids1_trim150_scaffold_115
Order: Sphingobacteriales (70.79%)
94 89933 bp 41.38 11.04 87.78
scnpilot_solids1_trim150_scaffold_64
Order: Sphingobacteriales (69.17%)
121 124400 bp 43.47 12.30 87.80
scnpilot_solids1_trim150_scaffold_602
Order: Sphingobacteriales (69.57%)
23 26979 bp 41.46 11.00 87.85
scnpilot_solids1_trim150_scaffold_52
Order: Sphingobacteriales (60.68%)
117 137834 bp 42.54 11.43 87.98
scnpilot_solids1_trim150_scaffold_194
Phylum: Bacteroidetes (69.23%)
52 61776 bp 43.05 12.16 88.07
scnpilot_solids1_trim150_scaffold_554
Order: Sphingobacteriales (66.67%)
24 28805 bp 42.55 10.56 88.13
scnpilot_solids1_trim150_scaffold_135
Phylum: Bacteroidetes (70.77%)
65 79443 bp 42.92 11.23 88.15
scnpilot_solids1_trim150_scaffold_15228
Species: Pseudopedobacter saltans (80%)
5 2135 bp 36.02 10.33 88.24
scnpilot_solids1_trim150_scaffold_150
Order: Sphingobacteriales (69.49%)
61 73662 bp 42.15 11.18 88.25
scnpilot_solids1_trim150_scaffold_417
Phylum: Bacteroidetes (82.61%)
23 37343 bp 42.89 11.99 88.28
scnpilot_solids1_trim150_scaffold_590
Order: Sphingobacteriales (66.67%)
19 27328 bp 43.29 11.73 88.37
scnpilot_solids1_trim150_scaffold_408
Order: Sphingobacteriales (72.22%)
36 38038 bp 43.27 11.54 88.37
scnpilot_solids1_trim150_scaffold_107
Phylum: Bacteroidetes (89.6%)
125 161828 bp 43.04 11.39 88.52
scnpilot_solids1_trim150_scaffold_92
Order: Sphingobacteriales (64.77%)
88 112542 bp 42.28 11.06 88.66
scnpilot_solids1_trim150_scaffold_3086
Phylum: Bacteroidetes (50%)
6 7035 bp 39.91 9.87 88.70
scnpilot_solids1_trim150_scaffold_895
Order: Sphingobacteriales (73.33%)
15 19395 bp 44.16 11.58 88.74
scnpilot_solids1_trim150_scaffold_511
Phylum: Bacteroidetes (78.43%)
52 53466 bp 42.23 11.15 88.87
scnpilot_solids1_trim150_scaffold_172
Order: Sphingobacteriales (68%)
50 66225 bp 43.11 11.98 88.87
scnpilot_solids1_trim150_scaffold_184
Order: Sphingobacteriales (54.17%)
96 118378 bp 42.71 11.35 88.90
scnpilot_solids1_trim150_scaffold_31
Order: Sphingobacteriales (75.97%)
156 189856 bp 42.32 11.24 88.90
scnpilot_solids1_trim150_scaffold_705
Phylum: Bacteroidetes (71.43%)
21 23735 bp 44.59 12.08 88.93
scnpilot_solids1_trim150_scaffold_206
Order: Sphingobacteriales (60.42%)
48 59709 bp 41.69 10.56 89.01
scnpilot_solids1_trim150_scaffold_945
Order: Sphingobacteriales (80%)
15 18556 bp 42.21 11.49 89.03
scnpilot_solids1_trim150_scaffold_588
Phylum: Bacteroidetes (71.88%)
33 27397 bp 39.96 10.76 89.15
scnpilot_solids1_trim150_scaffold_627
Order: Sphingobacteriales (60%)
25 29183 bp 42.32 11.36 89.16
scnpilot_solids1_trim150_scaffold_219
Order: Sphingobacteriales (61.29%)
62 64566 bp 43.08 10.67 89.20
scnpilot_solids1_trim150_scaffold_1180
Genus: Flavihumibacter (50%)
10 15283 bp 43.18 10.98 89.31
scnpilot_solids1_trim150_scaffold_563
Order: Sphingobacteriales (84%)
25 28309 bp 42.46 10.57 89.45
scnpilot_solids1_trim150_scaffold_487
Order: Sphingobacteriales (65.63%)
32 32374 bp 41.99 12.01 89.50
scnpilot_solids1_trim150_scaffold_119
Order: Sphingobacteriales (52.44%)
82 87877 bp 43.94 11.84 89.50
scnpilot_solids1_trim150_scaffold_259
Phylum: Bacteroidetes (55.56%)
36 52555 bp 41.69 11.15 89.59
scnpilot_solids1_trim150_scaffold_1229
Order: Sphingobacteriales (81.82%)
11 14765 bp 41.89 9.65 89.60
scnpilot_solids1_trim150_scaffold_20
Order: Sphingobacteriales (63.07%)
176 223483 bp 43.72 12.10 89.65
scnpilot_solids1_trim150_scaffold_57
Order: Sphingobacteriales (58.18%)
110 132793 bp 42.02 11.24 89.78
scnpilot_solids1_trim150_scaffold_401
Order: Sphingobacteriales (76.47%)
51 54804 bp 41.72 10.86 89.81
scnpilot_solids1_trim150_scaffold_1345
Species: Niastella koreensis (54.55%)
11 13902 bp 43.10 10.96 89.88
scnpilot_solids1_trim150_scaffold_204
Phylum: Bacteroidetes (80.85%)
47 60240 bp 41.98 12.06 90.05
scnpilot_solids1_trim150_scaffold_462
Phylum: Bacteroidetes (72.41%)
29 34209 bp 43.04 11.20 90.32
scnpilot_solids1_trim150_scaffold_10707
Genus: Sphingobacterium (60%)
5 2746 bp 40.93 10.49 90.35
scnpilot_solids1_trim150_scaffold_125
Order: Sphingobacteriales (78.46%)
66 85240 bp 42.27 10.98 90.37
scnpilot_solids1_trim150_scaffold_440
Order: Sphingobacteriales (69.57%)
23 35946 bp 41.88 10.20 90.46
scnpilot_solids1_trim150_scaffold_1169
Phylum: Bacteroidetes (93.33%)
15 15442 bp 43.14 13.02 90.49
scnpilot_solids1_trim150_scaffold_218
Order: Sphingobacteriales (52.27%)
44 58509 bp 42.29 10.81 90.50
scnpilot_solids1_trim150_scaffold_224
Phylum: Bacteroidetes (83.33%)
54 59946 bp 43.21 10.62 90.79
scnpilot_solids1_trim150_scaffold_273
Order: Sphingobacteriales (81.03%)
59 62057 bp 41.35 11.28 90.79
scnpilot_solids1_trim150_scaffold_138
Order: Sphingobacteriales (65.22%)
70 77722 bp 41.93 10.87 90.93
scnpilot_solids1_trim150_scaffold_299
Order: Sphingobacteriales (54.05%)
37 47896 bp 42.72 12.09 90.98
scnpilot_solids1_trim150_scaffold_559
Phylum: Bacteroidetes (54.55%)
22 28518 bp 44.33 12.20 90.98
Displaying items 51-100 of 122 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.