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scnpilot_dereplicated_Shinella_1

scnpilot-dereplicated_Shinella_sp__DD12_63_1
In projects: scnpilot-dereplicated

Consensus taxonomy: Shinella sp. DD12  →  Shinella  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 301-350 of 886 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_6188_curated
Species: Shinella sp. DD12 (71.43%)
7 5792 bp 66.25 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5013_curated
Species: Shinella sp. DD12 (85.71%)
7 6666 bp 66.94 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5857_curated
Order: Rhizobiales (71.43%)
7 8448 bp 63.86 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_30680_curated
Species: Shinella sp. DD12 (71.43%)
7 3940 bp 68.71 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7918_curated
Species: Shinella sp. DD12 (66.67%)
7 6428 bp 64.76 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8662_curated
Species: Shinella sp. DD12 (100%)
7 5910 bp 65.94 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_18007_curated
Species: Shinella sp. DD12 (85.71%)
7 4610 bp 66.85 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_17207_curated
Species: Shinella sp. DD12 (85.71%)
7 5506 bp 61.99 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_12528_curated
Species: Shinella sp. DD12 (100%)
7 7558 bp 63.67 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_25194_curated
Order: Rhizobiales (57.14%)
7 6454 bp 63.02 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_16245_curated
Order: Rhizobiales (100%)
7 6003 bp 60.87 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14658_curated
Species: Shinella sp. DD12 (57.14%)
7 5205 bp 66.76 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_18024_curated
Class: Alphaproteobacteria (57.14%)
7 6567 bp 58.95 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8827_curated
Species: Shinella sp. DD12 (85.71%)
7 5722 bp 64.33 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10563_curated
Species: Shinella sp. DD12 (57.14%)
7 4676 bp 59.99 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15639_curated
Order: Rhizobiales (57.14%)
7 5720 bp 63.37 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8599_curated
Order: Rhizobiales (100%)
7 8644 bp 59.05 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7213_curated
Order: Rhizobiales (71.43%)
7 5292 bp 62.74 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9448_curated
Species: Shinella sp. DD12 (57.14%)
7 4663 bp 63.50 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_6987_curated
Species: Shinella sp. DD12 (85.71%)
7 6687 bp 65.47 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5136_curated
Order: Rhizobiales (57.14%)
7 6548 bp 60.31 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_20358_curated
Species: Shinella sp. DD12 (57.14%)
7 2542 bp 65.30 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10101_curated
Species: Shinella sp. DD12 (85.71%)
7 5015 bp 65.10 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_17097_curated
Species: Rhizobium sp. CF080 (50%)
6 9554 bp 64.42 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8460_curated
Species: Shinella sp. DD12 (50%)
6 4692 bp 64.68 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_31404_curated
Species: Shinella sp. DD12 (66.67%)
6 3088 bp 61.11 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8612_curated
Order: Rhizobiales (100%)
6 6568 bp 65.58 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_6020_curated
Order: Rhodobacterales (66.67%)
6 7605 bp 67.77 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_17996_curated
Phylum: Proteobacteria (50%)
6 2621 bp 56.28 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10213_curated
Species: Shinella sp. DD12 (100%)
6 3219 bp 63.40 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_16437_curated
Order: Rhizobiales (50%)
6 5205 bp 63.09 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8681_curated
Species: Ensifer adhaerens (50%)
6 6174 bp 66.20 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7521_curated
Species: Shinella sp. DD12 (66.67%)
6 5115 bp 68.13 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7976_curated
Species: Shinella sp. DD12 (100%)
6 4662 bp 63.60 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_20419_curated
Species: Shinella sp. DD12 (50%)
6 5361 bp 62.28 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11116_curated
Order: Rhizobiales (83.33%)
6 6450 bp 61.66 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11339_curated
Species: Shinella sp. DD12 (83.33%)
6 4989 bp 60.71 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11596_curated
Order: Rhizobiales (50%)
6 4335 bp 57.49 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10979_curated
Species: Shinella sp. DD12 (66.67%)
6 6605 bp 65.28 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7908_curated
Species: Shinella sp. DD12 (66.67%)
6 5215 bp 59.50 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15240_curated
Species: Shinella sp. DD12 (83.33%)
6 6908 bp 62.55 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_16395_curated
Species: Shinella sp. DD12 (100%)
6 5630 bp 67.46 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7479_curated
Species: Shinella sp. DD12 (80%)
6 4977 bp 64.14 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10554_curated
Species: Shinella sp. DD12 (83.33%)
6 6188 bp 63.51 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7506_curated
Species: Shinella sp. DD12 (66.67%)
6 5138 bp 62.07 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_16082_curated
Species: Shinella sp. DD12 (83.33%)
6 7720 bp 55.80 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11620_curated
Species: Shinella sp. DD12 (83.33%)
6 6077 bp 64.11 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_25283_curated
Species: Shinella sp. DD12 (50%)
6 2678 bp 63.22 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14268_curated
Species: Shinella sp. DD12 (66.67%)
6 5344 bp 61.23 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_6081_curated
Species: Shinella sp. DD12 (100%)
6 5292 bp 66.74 1.00 0.00
Displaying items 301-350 of 886 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.