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PLM4_32_b1_sep16_Eisenbacteria_66_8

PLM4_32cm_b1_sep2016_Bacteria_66_8
In projects: PLM4_32cm_b1_sep2016  |  PLM2016-drep98-anvio  |  PLM2016-NC-80p

Consensus taxonomy: Bacteria

Description

according to rpS3: Candidatus Latescibacteria (Candidate division WS3)

Displaying items 1-50 of 103 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
PLM4_32_b1_sep16_scaffold_37
Domain: Bacteria (79.52%)
83 79914 bp 63.69 9.13 90.47
PLM4_32_b1_sep16_scaffold_6316
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 4747 bp 65.39 9.10 94.16
PLM4_32_b1_sep16_scaffold_261
Domain: Bacteria (90%)
40 51448 bp 64.48 9.03 88.10
PLM4_32_b1_sep16_scaffold_5231
Domain: Bacteria (83.33%)
6 5180 bp 62.07 8.98 79.00
PLM4_32_b1_sep16_scaffold_6091
Domain: Bacteria (100%)
6 4823 bp 65.19 8.83 91.81
PLM4_32_b1_sep16_scaffold_1174
Domain: Bacteria (73.33%)
30 36170 bp 65.02 8.78 82.53
PLM4_32_b1_sep16_scaffold_923
Domain: Bacteria (66.67%)
27 19285 bp 64.32 8.77 88.98
PLM4_32_b1_sep16_scaffold_585
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (53.33%)
15 16230 bp 64.61 8.70 89.56
PLM4_32_b1_sep16_scaffold_1148
Domain: Bacteria (86.96%)
23 21158 bp 66.52 8.59 91.98
PLM4_32_b1_sep16_scaffold_88
Domain: Bacteria (83.24%)
179 187673 bp 65.06 8.54 90.42
PLM4_32_b1_sep16_scaffold_978
Domain: Bacteria (83.33%)
18 19124 bp 64.70 8.54 92.05
PLM4_32_b1_sep16_scaffold_3152
Domain: Bacteria (83.33%)
12 17133 bp 65.35 8.54 94.10
PLM4_32_b1_sep16_scaffold_175
Domain: Bacteria (75.31%)
81 94975 bp 63.85 8.53 90.05
PLM4_32_b1_sep16_scaffold_965
Domain: Bacteria (91.18%)
34 35671 bp 65.56 8.51 88.94
PLM4_32_b1_sep16_scaffold_338
Phylum: Proteobacteria (53.33%)
15 21230 bp 65.31 8.51 95.91
PLM4_32_b1_sep16_scaffold_571
Domain: Bacteria (87.8%)
41 49945 bp 66.08 8.49 89.44
PLM4_32_b1_sep16_scaffold_2263
Domain: Bacteria (87.5%)
8 7731 bp 65.70 8.34 93.60
PLM4_32_b1_sep16_scaffold_332
Domain: Bacteria (83.84%)
99 106281 bp 64.83 8.31 89.11
PLM4_32_b1_sep16_scaffold_1648
Domain: Bacteria (87.5%)
8 8889 bp 64.75 8.29 89.37
PLM4_32_b1_sep16_scaffold_3474
Domain: Bacteria (85.71%)
7 6250 bp 65.33 8.26 90.14
PLM4_32_b1_sep16_scaffold_598
Domain: Bacteria (89.47%)
19 23275 bp 64.47 8.26 94.02
PLM4_32_b1_sep16_scaffold_129
Domain: Bacteria (82.67%)
75 82130 bp 65.81 8.22 89.86
PLM4_32_b1_sep16_scaffold_569
Domain: Bacteria (93.94%)
33 31847 bp 66.07 8.21 91.24
PLM4_32_b1_sep16_scaffold_1560
Domain: Bacteria (66.67%)
9 9147 bp 67.15 8.20 91.74
PLM4_32_b1_sep16_scaffold_336
Domain: Bacteria (56.52%)
23 21275 bp 66.92 8.19 87.49
PLM4_32_b1_sep16_scaffold_141
Domain: Bacteria (88.24%)
68 72218 bp 65.67 8.18 90.54
PLM4_32_b1_sep16_scaffold_268
Domain: Bacteria (85.57%)
97 91151 bp 65.29 8.18 92.14
PLM4_32_b1_sep16_scaffold_1571
Domain: Bacteria (83.33%)
6 9115 bp 62.62 8.16 86.76
PLM4_32_b1_sep16_scaffold_291
Domain: Bacteria (86.49%)
37 34484 bp 66.64 8.16 89.80
PLM4_32_b1_sep16_scaffold_210
Domain: Bacteria (84%)
25 28785 bp 67.03 8.14 93.47
PLM4_32_b1_sep16_scaffold_157
Domain: Bacteria (81.1%)
127 144114 bp 64.28 8.12 91.85
PLM4_32_b1_sep16_scaffold_1001
Domain: Bacteria (91.67%)
36 43756 bp 65.45 8.11 92.20
PLM4_32_b1_sep16_scaffold_1332
Domain: Bacteria (82.35%)
17 19519 bp 67.63 8.08 95.06
PLM4_32_b1_sep16_scaffold_81
Domain: Bacteria (85.71%)
63 60411 bp 65.85 8.08 92.65
PLM4_32_b1_sep16_scaffold_614
Domain: Bacteria (87.76%)
49 53579 bp 65.36 8.05 89.53
PLM4_32_b1_sep16_scaffold_470
Domain: Bacteria (88.24%)
17 21012 bp 65.50 8.05 92.08
PLM4_32_b1_sep16_scaffold_498
Domain: Bacteria (84.51%)
71 78646 bp 65.76 8.05 91.53
PLM4_32_b1_sep16_scaffold_491
Domain: Bacteria (76.6%)
47 62015 bp 66.85 8.03 90.46
PLM4_32_b1_sep16_scaffold_310
Domain: Bacteria (77.42%)
93 102243 bp 66.07 8.01 91.44
PLM4_32_b1_sep16_scaffold_3665
Domain: Bacteria (66.67%)
6 6090 bp 64.68 8.00 91.18
PLM4_32_b1_sep16_scaffold_938
Domain: Bacteria (68.75%)
32 31031 bp 63.00 7.99 87.50
PLM4_32_b1_sep16_scaffold_151
Domain: Bacteria (84.62%)
39 43775 bp 65.08 7.98 88.46
PLM4_32_b1_sep16_scaffold_729
Domain: Bacteria (72.31%)
65 70225 bp 65.80 7.93 88.75
PLM4_32_b1_sep16_scaffold_385
Domain: Bacteria (88%)
25 32065 bp 67.68 7.91 92.82
PLM4_32_b1_sep16_scaffold_16113
Domain: Bacteria (80%)
5 3075 bp 65.17 7.85 86.24
PLM4_32_b1_sep16_scaffold_1029
Domain: Bacteria (81.48%)
27 23919 bp 62.76 7.85 89.65
PLM4_32_b1_sep16_scaffold_902
Domain: Bacteria (95.45%)
22 27133 bp 65.96 7.82 92.22
PLM4_32_b1_sep16_scaffold_6921
Domain: Bacteria (100%)
6 4556 bp 67.67 7.80 95.61
PLM4_32_b1_sep16_scaffold_202
Domain: Bacteria (78.38%)
74 83756 bp 66.43 7.78 90.74
PLM4_32_b1_sep16_scaffold_1853
Domain: Bacteria (85.71%)
21 18098 bp 66.12 7.77 91.27
Displaying items 1-50 of 103 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.