name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_127933_1
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(128..1045)
|
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Caulobacter sp. AP07 RepID=J3AG19_9CAUL
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJL30674.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
alpha/beta hydrolase
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_2
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1172..2143
|
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Caulobacter sp. AP07 RepID=J2GKL1_9CAUL
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJL30675.1}; Flags: Precursor;; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
rhaS; AraC family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(2174..3544)
|
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037C4E07
two-component sensor histidine kinase protein
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_4
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3522..4205)
|
Two component transcriptional regulator n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V7B2_9RHIZ
Two component transcriptional regulator {ECO:0000313|EMBL:ENN89720.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
two-component response regulator protein
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_5
Pseudomonas fluorescens, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4338..5006
|
transcriptional regulator n=1 Tax=Pseudomonas fluorescens RepID=UPI0002FC25A3
XRE family transcriptional regulator {ECO:0000313|EMBL:EXF93266.1}; TaxID=1042209 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fluorescens HK44.;"
putative membrane protein
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_6
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5167..6453
|
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00035F9DE1
Secretion protein {ECO:0000313|EMBL:ENN89718.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
resistance nodulation cell division (RND) drug efflux pump, MFP component
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_7
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6450..9545
|
Acriflavin resistance protein HAE1 family Environmental Information Processing n=1 Tax=Rhizobium freirei PRF 81 RepID=N6VF43_9RHIZ
resistance nodulation cell division (RND) drug efflux pump, inner membrane component
Acriflavin resistance protein HAE1 family Environmental Information Processing {ECO:0000313|EMBL:ENN89717.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
9750..10745
|
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AYX3_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGK56334.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_9
Komagataeibacter intermedius, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10836..12089)
|
Major facilitator superfamily transporter n=1 Tax=Gluconacetobacter xylinus (strain NBRC 3288 / BCRC 11682 / LMG 1693) RepID=G2I4N6_GLUXN
Membrane protein {ECO:0000313|EMBL:KIE61062.1}; TaxID=1458464 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter intermedius AF2.;"
major facilitator superfamily transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_10
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12205..13155
|
Transcriptional regulator n=1 Tax=Rhizobium sp. AP16 RepID=J2LBP6_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJK84891.1}; Flags: Precursor;; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_11
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13145..13858)
|
transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=UPI00037917CA
Putative Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCE12089.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
GntR family transcriptional regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_12
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14106..15842
|
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:KGM35445.1}; EC=4.2.1.9 {ECO:0000313|EMBL:KGM35445.1};; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxyacid dehydratase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5E9H6_BRASB
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15861..16580
|
Demethylmenaquinone methyltransferase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YLG3_9RHIZ
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EIM24805.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
putative dimethylmenaquinone methyltransferase
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
16673..17185
|
hypothetical protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034CDE87
hypothetical protein
ErfK/YbiS/YcfS/YnhG {ECO:0000313|EMBL:ABE37713.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_15
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria
|
Not on your lists |
comp(17246..18643)
|
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003758C44
Two-component sensor kinase {ECO:0000313|EMBL:KJR40810.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
two-component sensor kinase
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_16
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18640..19314)
|
Beta-lactamase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H7H8_9BRAD
Transcriptional regulator {ECO:0000313|EMBL:ETR77747.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
two-component response regulator
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_17
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19680..20270
|
SAM-dependent methlyltransferase n=1 Tax=Bradyrhizobium elkanii RepID=UPI00036336FE
SAM-dependent methlyltransferase {ECO:0000313|EMBL:ETR77746.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ribosomal RNA adenine methylase transferase
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_18
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20278..20934
|
Bll8165 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89BI7_BRADU
Putative alkaline phosphatase protein {ECO:0000313|EMBL:BAR57777.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
alkaline phosphatase
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
21111..22562
|
Patatin n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I0L2_RHOVT
Uncharacterized protein {ECO:0000313|EMBL:KDP73277.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
patatin
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_20
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22635..23603)
|
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003094F8E
Glycine cleavage system T protein (Aminomethyltransferase) {ECO:0000313|EMBL:KFC66887.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
glycine cleavage T protein (aminomethyl transferase)
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23626..23979)
|
Putative translation initiation inhibitor, yjgF family n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CT72_RHILT
Putative translation initiation inhibitor, yjgF family {ECO:0000313|EMBL:EJC83025.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
endoribonuclease
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24006..24824)
|
polyamine ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI0003712CE0
polyamine ABC transporter permease
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:EJC72229.1}; Flags: Precursor;; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_23
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(24824..26080)
|
polyamine ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035FFBAA
ABC transporter permease protein
ABC transporter permease protein {ECO:0000313|EMBL:AJD44747.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_24
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(26151..27215)
|
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000370505D
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EJT02059.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
spermidine/putrescine ABC transporter substrate-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(27254..28339)
|
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003771818
spermidine/putrescine ABC transporter ATP-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_26
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
28616..30025
|
GntR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000375B643
transcriptional regulator/aminotransferase domain-containing protein
Transcriptional regulator/aminotransferase domain-containing protein {ECO:0000313|EMBL:AJD44750.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_27
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
30028..31344
|
Glycine/D-amino acid oxidase, deaminating n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0BNF8_RHILV
Glycine/D-amino acid oxidase, deaminating {ECO:0000313|EMBL:EJC71632.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
FAD dependent oxidoreductase protein
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_28
bacterium YEK0313, Bacteria
|
Not on your lists |
31464..32858
|
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00220, ECO:0000256|SAAS:SAAS00252556}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00220};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00220};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
dihydroorotase (EC:3.5.2.5)
Dihydroorotase, multifunctional complex type n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IF13_METNO
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_29
Bartonella clarridgeiae, Bartonella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
32893..33159
|
xseB; Exodeoxyribonuclease small subunit (EC:3.1.11.6)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=696125 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella.;" source="Bartonella clarridgeiae (strain CIP 104772 / 73).;"
exodeoxyribonuclease VII small subunit n=1 Tax=Xanthobacteraceae RepID=UPI00035D14D5
|
|
berkeley_reactor_200306_biofilm_scaffold_127933_30
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
33390..35318
|
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YQ62_9RHIZ
1-deoxy-D-xylulose 5-phosphate synthase
|