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scnpilot_dereplicated_Rhizobiales_5

scnpilot-dereplicated_Rhizobiales_66_1
In projects: SCNPILOT_CONT_300_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Auto curated genome
Original version: SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial

Properties

Avg. coverage: 1.00 Longest contig: 53.82 Kbp Bin length: 3.99 Mbp GC content: 65.82 %
Contigs count: 330 Features count: 4144 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 BSCG 35 / 51 MC: 1 ASCG 8 / 38 MC: 1
Displaying items 51-100 of 330 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_2243_curated
Order: Rhizobiales (71.43%)
14 12572 bp 65.48 1.00 92.42
SCNpilot_cont_300_bf_scaffold_2090_curated
Species: Mesorhizobium opportunistum (50%)
12 9739 bp 67.30 1.00 92.35
SCNpilot_cont_300_bf_scaffold_1242_curated
Class: Alphaproteobacteria (55.56%)
27 28322 bp 65.10 1.00 92.27
SCNpilot_cont_300_bf_scaffold_1311_curated
Order: Rhizobiales (52.94%)
17 17568 bp 68.38 1.00 92.18
SCNpilot_cont_300_bf_scaffold_1982_curated
Class: Alphaproteobacteria (91.67%)
12 12250 bp 67.19 1.00 92.16
SCNpilot_cont_300_bf_scaffold_838_curated
Order: Rhizobiales (53.19%)
47 48683 bp 68.31 1.00 92.15
SCNpilot_cont_300_bf_scaffold_5000_curated
Phylum: Proteobacteria (54.55%)
11 10719 bp 67.21 1.00 91.97
SCNpilot_cont_300_bf_scaffold_3117_curated
Class: Alphaproteobacteria (63.64%)
11 8909 bp 66.28 1.00 91.86
SCNpilot_cont_300_bf_scaffold_4712_curated
Order: Rhizobiales (62.5%)
8 6530 bp 67.03 1.00 91.79
SCNpilot_cont_300_bf_scaffold_1208_curated
Order: Rhizobiales (66.67%)
18 20366 bp 67.84 1.00 91.77
SCNpilot_cont_300_bf_scaffold_3963_curated
Class: Alphaproteobacteria (80%)
5 4821 bp 66.48 1.00 91.66
SCNpilot_cont_300_bf_scaffold_2701_curated
Order: Rhizobiales (50%)
8 7510 bp 66.78 1.00 91.60
SCNpilot_cont_300_bf_scaffold_1946_curated
Order: Rhizobiales (55.56%)
9 9851 bp 66.42 1.00 91.27
SCNpilot_cont_300_bf_scaffold_2787_curated
Species: Mesorhizobium metallidurans (78.57%)
14 13211 bp 67.24 1.00 91.17
SCNpilot_cont_300_bf_scaffold_2782_curated
Genus: Mesorhizobium (80%)
5 7345 bp 67.56 1.00 90.96
SCNpilot_cont_300_bf_scaffold_2986_curated
Order: Rhizobiales (62.5%)
8 6954 bp 67.04 1.00 90.94
SCNpilot_cont_300_bf_scaffold_3566_curated
Species: Burkholderia glathei (57.14%)
7 7135 bp 66.71 1.00 90.78
SCNpilot_cont_300_bf_scaffold_2129_curated
Order: Rhizobiales (54.55%)
11 10838 bp 64.70 1.00 90.74
SCNpilot_cont_300_bf_scaffold_2708_curated
Order: Rhizobiales (66.67%)
9 9912 bp 68.98 1.00 90.53
SCNpilot_cont_300_bf_scaffold_4950_curated
Order: Rhizobiales (80%)
10 10867 bp 66.85 1.00 90.44
SCNpilot_cont_300_bf_scaffold_3802_curated
Order: Rhizobiales (50%)
8 10495 bp 66.55 1.00 90.41
SCNpilot_cont_300_bf_scaffold_1404_curated
Order: Rhizobiales (56.25%)
16 13064 bp 67.93 1.00 90.39
SCNpilot_cont_300_bf_scaffold_5331_curated
Order: Rhizobiales (72.73%)
11 8741 bp 65.72 1.00 90.37
SCNpilot_cont_300_bf_scaffold_4615_curated
Order: Rhizobiales (60%)
5 5090 bp 65.01 1.00 90.24
SCNpilot_cont_300_bf_scaffold_2142_curated
Order: Rhizobiales (56.25%)
16 17275 bp 65.51 1.00 90.22
SCNpilot_cont_300_bf_scaffold_4792_curated
Species: Rhodovulum sp. NI22 (60%)
5 5020 bp 65.84 1.00 90.00
SCNpilot_cont_300_bf_scaffold_5263_curated
Order: Rhizobiales (66.67%)
12 13845 bp 65.76 1.00 89.90
SCNpilot_cont_300_bf_scaffold_2764_curated
Order: Rhizobiales (72.73%)
11 9751 bp 65.02 1.00 89.90
SCNpilot_cont_300_bf_scaffold_6603_curated
Order: Rhizobiales (100%)
8 6132 bp 67.55 1.00 89.87
SCNpilot_cont_300_bf_scaffold_6835_curated
Genus: Methylobacterium (70%)
10 6286 bp 63.82 1.00 89.87
SCNpilot_cont_300_bf_scaffold_2376_curated
Order: Rhizobiales (70%)
10 11194 bp 67.38 1.00 89.86
SCNpilot_cont_300_bf_scaffold_1673_curated
Order: Rhizobiales (78.95%)
19 20035 bp 66.33 1.00 89.86
SCNpilot_cont_300_bf_scaffold_1971_curated
Genus: Mesorhizobium (69.23%)
13 10947 bp 66.50 1.00 89.81
SCNpilot_cont_300_bf_scaffold_2149_curated
Class: Alphaproteobacteria (75.68%)
37 35950 bp 66.12 1.00 89.72
SCNpilot_cont_300_bf_scaffold_1467_curated
Phylum: Proteobacteria (61.54%)
13 12680 bp 66.28 1.00 89.65
SCNpilot_cont_300_bf_scaffold_6892_curated
Order: Rhizobiales (55.56%)
9 7213 bp 67.24 1.00 89.63
SCNpilot_cont_300_bf_scaffold_2608_curated
Genus: Mesorhizobium (50%)
12 12430 bp 66.03 1.00 89.42
SCNpilot_cont_300_bf_scaffold_2629_curated
Class: Alphaproteobacteria (69.23%)
13 16657 bp 65.20 1.00 89.40
SCNpilot_cont_300_bf_scaffold_3229_curated
Class: Alphaproteobacteria (88.89%)
9 6568 bp 65.48 1.00 89.34
SCNpilot_cont_300_bf_scaffold_1819_curated
Order: Rhizobiales (72%)
25 23303 bp 65.93 1.00 89.29
SCNpilot_cont_300_bf_scaffold_5823_curated
Class: Alphaproteobacteria (88.89%)
9 6562 bp 65.45 1.00 89.29
SCNpilot_cont_300_bf_scaffold_2471_curated
Genus: Mesorhizobium (92.86%)
14 15294 bp 66.20 1.00 89.11
SCNpilot_cont_300_bf_scaffold_2526_curated
Class: Alphaproteobacteria (57.14%)
7 7935 bp 68.14 1.00 89.04
SCNpilot_cont_300_bf_scaffold_10346_curated
Order: Rhizobiales (50%)
10 8819 bp 66.39 1.00 89.02
SCNpilot_cont_300_bf_scaffold_4204_curated
Order: Rhizobiales (50%)
12 12901 bp 66.54 1.00 88.99
SCNpilot_cont_300_bf_scaffold_2687_curated
Order: Rhizobiales (55.56%)
9 7548 bp 66.16 1.00 88.99
SCNpilot_cont_300_bf_scaffold_4032_curated
Order: Rhizobiales (50%)
10 5543 bp 66.39 1.00 88.98
SCNpilot_cont_300_bf_scaffold_3601_curated
Order: Rhizobiales (70%)
20 23175 bp 66.06 1.00 88.96
SCNpilot_cont_300_bf_scaffold_3447_curated
Phylum: Proteobacteria (50%)
20 16178 bp 66.42 1.00 88.94
SCNpilot_cont_300_bf_scaffold_4227_curated
Order: Rhizobiales (53.85%)
13 9985 bp 66.84 1.00 88.87
Displaying items 51-100 of 330 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.