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SCNPILOT_CONT_500_BF_Rhodospirillales_70_8

SCNPILOT_CONT_500_BF_Alphaproteobacteria_70_8
In projects: SCNPILOT_CONT_500_BF

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_cont_500_bf_UNK

Properties

Avg. coverage: 7.90 Longest contig: 124.35 Kbp Bin length: 5.79 Mbp GC content: 69.76 %
Contigs count: 208 Features count: 5491 rRNAs count: 0 tRNAs count: 42

Genome completeness

partial RP 30 / 55 MC: 1 BSCG 28 / 51 MC: 1 ASCG 8 / 38

Description

from TS-ESOM

Displaying items 51-100 of 208 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_500_bf_scaffold_778
Order: Rhodospirillales (66.67%)
60 64379 bp 70.78 9.15 91.55
SCNpilot_cont_500_bf_scaffold_442
Class: Alphaproteobacteria (75.93%)
54 57390 bp 70.03 8.09 91.43
SCNpilot_cont_500_bf_scaffold_1232
Class: Alphaproteobacteria (60%)
45 45159 bp 71.18 7.95 91.30
SCNpilot_cont_500_bf_scaffold_6683
Class: Alphaproteobacteria (100%)
7 6025 bp 70.19 6.60 91.27
SCNpilot_cont_500_bf_scaffold_6719
Genus: Afipia (60%)
5 6002 bp 61.90 8.25 91.27
SCNpilot_cont_500_bf_scaffold_1162
Order: Rhodospirillales (54.17%)
24 24924 bp 71.94 8.20 91.26
SCNpilot_cont_500_bf_scaffold_3222
Order: Rhodospirillales (57.14%)
14 16907 bp 70.64 7.16 91.24
SCNpilot_cont_500_bf_scaffold_3175
Order: Rhodospirillales (69.23%)
13 16293 bp 70.57 7.01 91.22
SCNpilot_cont_500_bf_scaffold_2888
Order: Rhodospirillales (53.85%)
13 11993 bp 71.18 9.13 91.08
SCNpilot_cont_500_bf_scaffold_1755
Order: Rhodospirillales (65.31%)
49 54559 bp 70.21 7.97 91.01
SCNpilot_cont_500_bf_scaffold_3371
Order: Rhodospirillales (60%)
10 10584 bp 69.68 8.10 90.84
SCNpilot_cont_500_bf_scaffold_6195
Class: Alphaproteobacteria (50%)
8 6411 bp 63.20 5.50 90.83
SCNpilot_cont_500_bf_scaffold_830
Order: Rhodospirillales (67.57%)
37 39572 bp 71.32 8.12 90.81
SCNpilot_cont_500_bf_scaffold_2488
Class: Alphaproteobacteria (71.43%)
21 21879 bp 69.70 7.79 90.81
SCNpilot_cont_500_bf_scaffold_1587
Phylum: Proteobacteria (54.55%)
22 23542 bp 65.62 7.45 90.80
SCNpilot_cont_500_bf_scaffold_5636
Order: Rhodospirillales (71.43%)
14 15379 bp 68.38 7.33 90.71
SCNpilot_cont_500_bf_scaffold_1762
Order: Rhodospirillales (57.69%)
26 24877 bp 67.94 7.54 90.68
SCNpilot_cont_500_bf_scaffold_3917
Class: Alphaproteobacteria (64.29%)
14 11556 bp 68.01 6.75 90.63
SCNpilot_cont_500_bf_scaffold_4432
Class: Alphaproteobacteria (61.9%)
21 17794 bp 68.87 7.10 90.60
SCNpilot_cont_500_bf_scaffold_3384
Class: Alphaproteobacteria (60%)
10 11345 bp 63.89 7.80 90.60
SCNpilot_cont_500_bf_scaffold_4953
Species: Bradyrhizobium sp. DFCI-1 (55.56%)
9 7744 bp 64.64 6.49 90.53
SCNpilot_cont_500_bf_scaffold_3929
Class: Alphaproteobacteria (72.73%)
22 25102 bp 70.90 7.23 90.52
SCNpilot_cont_500_bf_scaffold_3072
Order: Rhodospirillales (81.25%)
16 15714 bp 70.19 7.94 90.49
SCNpilot_cont_500_bf_scaffold_2119
Class: Alphaproteobacteria (61.9%)
42 42268 bp 70.87 7.62 90.40
SCNpilot_cont_500_bf_scaffold_414
Order: Rhodospirillales (58.33%)
72 74886 bp 70.96 8.09 90.39
SCNpilot_cont_500_bf_scaffold_1067
Order: Rhodospirillales (50%)
36 33751 bp 69.76 7.81 90.39
SCNpilot_cont_500_bf_scaffold_2784
Order: Rhodospirillales (69.05%)
42 42258 bp 70.75 7.51 90.39
SCNpilot_cont_500_bf_scaffold_357
Class: Alphaproteobacteria (71.96%)
107 124347 bp 68.78 7.89 90.38
SCNpilot_cont_500_bf_scaffold_2097
Order: Rhodospirillales (65.57%)
61 62843 bp 70.24 7.15 90.35
SCNpilot_cont_500_bf_scaffold_1818
Order: Rhodospirillales (60%)
20 24647 bp 71.77 8.37 90.35
SCNpilot_cont_500_bf_scaffold_4506
Order: Rhodospirillales (66.67%)
15 14704 bp 69.70 6.70 90.30
SCNpilot_cont_500_bf_scaffold_1956
Class: Alphaproteobacteria (88%)
25 26951 bp 69.62 8.56 90.24
SCNpilot_cont_500_bf_scaffold_1830
Order: Rhodospirillales (61.54%)
13 17389 bp 72.30 8.01 90.23
SCNpilot_cont_500_bf_scaffold_1122
Class: Alphaproteobacteria (60.78%)
51 55275 bp 70.00 8.53 90.15
SCNpilot_cont_500_bf_scaffold_1898
Order: Rhodospirillales (52.38%)
42 48917 bp 70.79 8.15 90.10
SCNpilot_cont_500_bf_scaffold_2824
Order: Rhodospirillales (83.33%)
12 12280 bp 72.07 8.49 90.05
SCNpilot_cont_500_bf_scaffold_1437
Phylum: Proteobacteria (66.67%)
18 21386 bp 57.64 8.48 89.96
SCNpilot_cont_500_bf_scaffold_7309
Order: Rhodospirillales (83.33%)
6 5626 bp 69.55 7.24 89.96
SCNpilot_cont_500_bf_scaffold_1954
Phylum: Proteobacteria (69.23%)
13 16476 bp 67.86 7.95 89.95
SCNpilot_cont_500_bf_scaffold_5046
Order: Rhodospirillales (66.67%)
21 21794 bp 70.68 7.46 89.94
SCNpilot_cont_500_bf_scaffold_3491
Order: Rhizobiales (50%)
10 10244 bp 69.02 7.10 89.91
SCNpilot_cont_500_bf_scaffold_1586
Order: Rhodospirillales (63.89%)
36 36094 bp 70.10 7.65 89.90
SCNpilot_cont_500_bf_scaffold_4483
Phylum: Proteobacteria (51.11%)
45 37655 bp 58.88 6.56 89.86
SCNpilot_cont_500_bf_scaffold_1666
Class: Alphaproteobacteria (75%)
40 42708 bp 70.75 8.25 89.80
SCNpilot_cont_500_bf_scaffold_772
Class: Alphaproteobacteria (77.5%)
40 40238 bp 70.57 7.82 89.78
SCNpilot_cont_500_bf_scaffold_1459
Order: Rhodospirillales (71.11%)
45 49176 bp 69.23 8.06 89.76
SCNpilot_cont_500_bf_scaffold_7220
Order: Rhizobiales (71.43%)
21 17845 bp 62.39 6.19 89.69
SCNpilot_cont_500_bf_scaffold_685
Class: Alphaproteobacteria (74.68%)
79 88297 bp 70.88 8.52 89.63
SCNpilot_cont_500_bf_scaffold_1380
Order: Rhodospirillales (57.14%)
35 42589 bp 70.03 7.04 89.53
SCNpilot_cont_500_bf_scaffold_3111 16 11333 bp 56.72 7.06 89.50
Displaying items 51-100 of 208 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.