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scnpilot_dereplicated_Alphaproteobacteria_4

scnpilot-dereplicated_Alphaproteobacteria_64_1
In projects: scnpilot-dereplicated

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 101-150 of 191 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_15871_curated
Domain: Bacteria (60%)
10 9480 bp 61.89 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11308_curated
Class: Alphaproteobacteria (60%)
10 6186 bp 61.64 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9395_curated
Class: Alphaproteobacteria (60%)
10 5969 bp 64.37 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10377_curated
Phylum: Proteobacteria (50%)
10 7210 bp 63.18 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9672_curated
Class: Alphaproteobacteria (70%)
10 7335 bp 63.93 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_16531_curated
Class: Alphaproteobacteria (70%)
10 8445 bp 64.64 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5332_curated
Class: Alphaproteobacteria (70%)
10 8310 bp 57.68 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_12913_curated
Phylum: Proteobacteria (50%)
10 6920 bp 63.77 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10637_curated
Class: Alphaproteobacteria (50%)
10 8884 bp 63.32 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7594_curated
Class: Alphaproteobacteria (60%)
10 9264 bp 63.62 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10432_curated
Class: Alphaproteobacteria (50%)
10 7463 bp 58.98 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15996_curated
Domain: Bacteria (60%)
10 8985 bp 63.77 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_12934_curated
Class: Alphaproteobacteria (60%)
10 6861 bp 62.57 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_4225_curated 10 7894 bp 67.98 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10429_curated
Domain: Bacteria (60%)
10 5933 bp 66.07 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11127_curated
Class: Alphaproteobacteria (66.67%)
10 7447 bp 63.13 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_19583_curated
Class: Alphaproteobacteria (60%)
10 6926 bp 63.60 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7611_curated
Class: Alphaproteobacteria (77.78%)
10 9595 bp 60.34 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_4344_curated
Class: Alphaproteobacteria (50%)
10 9197 bp 65.52 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10337_curated 9 7453 bp 56.38 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14882_curated 9 6871 bp 64.37 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_12233_curated
Domain: Bacteria (55.56%)
9 6067 bp 65.53 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7031_curated
Class: Alphaproteobacteria (66.67%)
9 9949 bp 65.54 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7904_curated
Class: Alphaproteobacteria (55.56%)
9 7448 bp 61.77 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5400_curated
Class: Alphaproteobacteria (66.67%)
9 6403 bp 65.34 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11329_curated
Class: Alphaproteobacteria (77.78%)
9 5624 bp 66.36 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_6265_curated 9 5628 bp 66.33 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8529_curated
Order: Rhizobiales (88.89%)
9 5914 bp 64.74 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9231_curated
Class: Alphaproteobacteria (100%)
9 8912 bp 65.55 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10828_curated
Domain: Bacteria (77.78%)
9 7060 bp 64.75 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_13992_curated
Class: Alphaproteobacteria (62.5%)
8 7325 bp 60.38 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9410_curated
Class: Alphaproteobacteria (50%)
8 5675 bp 64.14 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_12105_curated
Class: Alphaproteobacteria (50%)
8 5042 bp 59.64 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9547_curated
Class: Alphaproteobacteria (50%)
8 5271 bp 62.42 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_4633_curated
Order: Rhizobiales (75%)
8 6329 bp 66.96 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8703_curated
Class: Alphaproteobacteria (75%)
8 8191 bp 64.80 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10700_curated
Order: Rhizobiales (50%)
8 5649 bp 63.46 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9953_curated
Class: Alphaproteobacteria (50%)
8 6216 bp 62.85 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5839_curated
Class: Alphaproteobacteria (50%)
8 5891 bp 65.57 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14973_curated
Order: Rhizobiales (50%)
8 5316 bp 60.85 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_19898_curated
Domain: Bacteria (62.5%)
8 7113 bp 60.97 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_17095_curated
Phylum: Proteobacteria (62.5%)
8 5022 bp 66.15 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10743_curated
Class: Alphaproteobacteria (75%)
8 7911 bp 64.73 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_3154_curated
Class: Alphaproteobacteria (75%)
8 8379 bp 66.55 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15633_curated
Phylum: Proteobacteria (57.14%)
8 6270 bp 62.95 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11159_curated
Order: Rhizobiales (50%)
8 5139 bp 65.21 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15511_curated
Class: Alphaproteobacteria (85.71%)
7 5220 bp 62.61 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14309_curated
Class: Alphaproteobacteria (71.43%)
7 5093 bp 67.29 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_6149_curated
Class: Alphaproteobacteria (57.14%)
7 9602 bp 57.42 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9656_curated
Class: Alphaproteobacteria (57.14%)
7 4897 bp 64.63 1.00 0.00
Displaying items 101-150 of 191 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.