ggKbase home page

scnpilot_dereplicated_Shinella_1

scnpilot-dereplicated_Shinella_sp__DD12_63_1
In projects: scnpilot-dereplicated

Consensus taxonomy: Shinella sp. DD12  →  Shinella  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Displaying items 201-250 of 886 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_11016_curated
Species: Shinella sp. DD12 (100%)
10 8193 bp 64.75 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9445_curated
Species: Shinella sp. DD12 (55.56%)
10 6808 bp 59.09 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_12180_curated
Species: Shinella sp. DD12 (90%)
10 6945 bp 61.50 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_19593_curated
Order: Rhizobiales (66.67%)
9 8280 bp 61.62 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14201_curated 9 5175 bp 65.82 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_13476_curated
Species: Shinella sp. DD12 (55.56%)
9 6746 bp 62.20 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_17579_curated
Species: Shinella sp. DD12 (66.67%)
9 7849 bp 62.57 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8356_curated
Order: Sphingomonadales (77.78%)
9 10381 bp 55.91 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15892_curated
Species: Shinella sp. DD12 (88.89%)
9 6090 bp 60.51 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11541_curated
Species: Shinella sp. DD12 (100%)
9 7057 bp 65.91 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8304_curated
Species: Shinella sp. DD12 (77.78%)
9 9500 bp 63.61 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7820_curated
Species: Shinella sp. DD12 (77.78%)
9 9340 bp 62.38 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11567_curated
Species: Shinella sp. DD12 (77.78%)
9 6924 bp 62.46 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10228_curated
Species: Shinella sp. DD12 (55.56%)
9 5746 bp 63.30 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14235_curated
Species: Rhizobium leguminosarum (55.56%)
9 7458 bp 64.13 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_3827_curated
Species: Shinella sp. DD12 (77.78%)
9 8954 bp 69.06 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9913_curated
Order: Rhizobiales (55.56%)
9 10794 bp 63.61 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5681_curated
Species: Shinella sp. DD12 (100%)
9 7044 bp 64.52 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_7912_curated
Order: Rhizobiales (55.56%)
9 7074 bp 55.75 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_4928_curated
Species: Shinella sp. DD12 (77.78%)
9 9042 bp 64.29 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15094_curated
Species: Shinella sp. DD12 (77.78%)
9 5464 bp 63.18 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_14324_curated
Order: Rhizobiales (77.78%)
9 7763 bp 63.45 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8066_curated
Species: Shinella sp. DD12 (88.89%)
9 10242 bp 66.52 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_3406_curated
Order: Rhizobiales (100%)
9 8362 bp 66.38 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_2746_curated
Species: Shinella sp. DD12 (77.78%)
9 9808 bp 66.51 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9484_curated
Species: Shinella sp. DD12 (100%)
9 7317 bp 66.19 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5338_curated
Species: Agrobacterium tumefaciens (77.78%)
9 7053 bp 66.44 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5218_curated
Order: Rhizobiales (77.78%)
9 7940 bp 59.32 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5406_curated
Species: Shinella sp. DD12 (88.89%)
9 7602 bp 63.59 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9839_curated
Order: Rhizobiales (55.56%)
9 5502 bp 60.87 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8110_curated
Species: Shinella sp. DD12 (77.78%)
9 7601 bp 62.39 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11271_curated
Species: Shinella sp. DD12 (77.78%)
9 6220 bp 63.33 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_5456_curated
Species: Ponticoccus sp. UMTAT08 (55.56%)
9 8941 bp 61.34 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_17105_curated
Species: Shinella sp. DD12 (55.56%)
9 8387 bp 62.64 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_10460_curated
Species: Shinella sp. DD12 (77.78%)
9 7101 bp 62.36 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_17545_curated
Order: Rhizobiales (88.89%)
9 6014 bp 61.62 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8631_curated
Genus: Novosphingobium (50%)
8 6718 bp 65.75 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_4336_curated
Genus: Hoeflea (62.5%)
8 6753 bp 64.16 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15911_curated
Species: Shinella sp. DD12 (75%)
8 5395 bp 62.61 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_13353_curated
Species: Shinella sp. DD12 (75%)
8 10010 bp 62.69 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_8355_curated
Species: Ensifer adhaerens (50%)
8 7314 bp 68.10 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9695_curated
Species: Shinella sp. DD12 (87.5%)
8 8146 bp 65.68 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_9459_curated
Species: Shinella sp. DD12 (50%)
8 6242 bp 61.76 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15733_curated
Species: Shinella sp. DD12 (50%)
8 5084 bp 59.13 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_13651_curated
Species: Shinella sp. DD12 (75%)
8 7115 bp 66.04 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_4263_curated
Species: Shinella sp. DD12 (100%)
8 7396 bp 65.54 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_2833_curated
Species: Shinella sp. DD12 (87.5%)
8 10478 bp 68.70 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_12612_curated
Species: Shinella sp. DD12 (87.5%)
8 5536 bp 68.82 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_15896_curated
Class: Alphaproteobacteria (50%)
8 6801 bp 58.30 1.00 0.00
SCNpilot_expt_1000_bf_scaffold_11319_curated
Species: Shinella sp. DD12 (75%)
8 6970 bp 60.90 1.00 0.00
Displaying items 201-250 of 886 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.