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CN-SCN_Pelagibacterium_44x

CN-SCN_Devosia_64_44
In projects: CN-SCN

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 43.89 Longest contig: 352.51 Kbp Bin length: 8.15 Mbp GC content: 64.42 %
Contigs count: 111 Features count: 8007 rRNAs count: 0 tRNAs count: 85

Genome completeness

megabin RP 51 / 55 MC: 39 BSCG 50 / 51 MC: 37 ASCG 13 / 38 MC: 11

Description

Partial double 90

Displaying items 1-50 of 111 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_1849 PEL42_71
Genus: Devosia (73.53%)
34 30441 bp 62.59 35.90 88.83
cn_combo_scaffold_1776 PEL42_69
Species: Xanthobacter autotrophicus (81.25%)
32 30170 bp 66.28 35.97 88.13
cn_combo_scaffold_1025 PEL42_51
Genus: Devosia (86.27%)
51 47166 bp 61.55 37.25 83.39
cn_combo_scaffold_1614 PEL42_67
Genus: Devosia (70.59%)
34 32388 bp 62.45 37.42 84.73
cn_combo_scaffold_4076 PEL42_93
Class: Alphaproteobacteria (62.5%)
16 14367 bp 60.20 37.42 90.39
cn_combo_scaffold_1649 PEL42_68
Species: Devosia chinhatensis (68%)
25 31876 bp 62.76 38.27 89.73
cn_combo_scaffold_1249 PEL42_56
Order: Rhizobiales (64.86%)
37 40227 bp 63.34 38.53 93.14
cn_combo_scaffold_5210 PEL42_97
Species: Sinorhizobium fredii (50%)
12 11317 bp 67.13 38.78 93.50
cn_combo_scaffold_605 PEL42_31
Species: Devosia chinhatensis (63.89%)
72 67712 bp 64.72 38.79 91.42
cn_combo_scaffold_1310 PEL42_60
Order: Rhizobiales (50.88%)
57 55800 bp 62.42 39.04 89.04
cn_combo_scaffold_1255 PEL42_57
Species: Devosia chinhatensis (69.7%)
66 67800 bp 64.59 39.13 88.09
cn_combo_scaffold_1430 PEL42_65
Species: Nitratireductor indicus (64.44%)
45 36919 bp 64.38 39.20 82.64
cn_combo_scaffold_887 PEL42_48
Genus: Devosia (62.26%)
53 56736 bp 63.38 39.28 91.83
cn_combo_scaffold_5687 PEL42_99
Class: Alphaproteobacteria (78.57%)
14 12124 bp 58.59 39.37 92.44
cn_combo_scaffold_2505 PEL42_81
Order: Rhizobiales (57.69%)
26 22055 bp 63.55 39.44 91.06
cn_combo_scaffold_7571 PEL42_105
Species: Devosia chinhatensis (83.33%)
6 8145 bp 63.83 39.52 91.68
cn_combo_scaffold_1323 PEL42_62
Species: Devosia chinhatensis (56%)
50 46105 bp 64.28 39.56 88.04
cn_combo_scaffold_273 PEL42_19
Species: Devosia chinhatensis (57.35%)
136 150277 bp 64.31 39.58 92.35
cn_combo_scaffold_2281 PEL42_76
Species: Devosia chinhatensis (60.61%)
33 38053 bp 63.43 39.62 87.61
cn_combo_scaffold_411 PEL42_26
Genus: Devosia (67.78%)
90 86753 bp 64.15 39.68 89.96
cn_combo_scaffold_1299 PEL42_58
Species: Devosia chinhatensis (58.97%)
39 39066 bp 65.07 39.80 89.97
cn_combo_scaffold_1303 PEL42_59
Species: Devosia chinhatensis (61.9%)
42 38992 bp 64.52 40.00 88.28
cn_combo_scaffold_644 PEL42_35
Order: Rhizobiales (58.43%)
89 83129 bp 61.38 40.08 90.86
cn_combo_scaffold_1861 PEL42_72
Species: Devosia chinhatensis (80.43%)
46 34543 bp 64.32 40.14 88.03
cn_combo_scaffold_1418 PEL42_63
Species: Devosia chinhatensis (78.95%)
38 36375 bp 64.13 40.15 91.41
cn_combo_scaffold_9235 PEL42_109
Species: Devosia chinhatensis (66.67%)
6 6811 bp 63.10 40.18 86.24
cn_combo_scaffold_2538 PEL42_83
Order: Rhizobiales (80%)
25 21890 bp 61.01 40.37 89.71
cn_combo_scaffold_283 PEL42_18
Order: Rhizobiales (81.61%)
87 109063 bp 62.57 40.55 88.86
cn_combo_scaffold_445 PEL42_28
Genus: Devosia (60.47%)
129 107761 bp 65.72 40.58 88.62
cn_combo_scaffold_2513 PEL42_82
Class: Alphaproteobacteria (88%)
25 23262 bp 62.21 40.63 84.50
cn_combo_scaffold_2965 PEL42_89
Genus: Devosia (80.95%)
42 33365 bp 64.60 40.75 86.79
cn_combo_scaffold_9634 PEL42_110
Species: Devosia chinhatensis (54.55%)
11 6531 bp 63.13 40.85 82.56
cn_combo_scaffold_9989 PEL42_112
Genus: Devosia (100%)
7 6323 bp 66.38 41.21 86.78
cn_combo_scaffold_3984 PEL42_92
Species: Devosia chinhatensis (69.23%)
13 14657 bp 63.55 41.24 90.55
cn_combo_scaffold_1326 PEL42_61
Species: Devosia chinhatensis (56.25%)
32 38553 bp 64.23 41.32 90.72
cn_combo_scaffold_711 PEL42_38
Species: Devosia chinhatensis (58.06%)
62 61241 bp 65.73 41.37 87.01
cn_combo_scaffold_103 PEL42_8
Genus: Devosia (68.79%)
173 187226 bp 64.15 41.48 91.19
cn_combo_scaffold_931 PEL42_50
Genus: Devosia (84.62%)
52 58668 bp 65.31 41.51 87.06
cn_combo_scaffold_2641 PEL42_86
Order: Rhizobiales (50%)
22 21172 bp 63.82 41.55 82.00
cn_combo_scaffold_7229 PEL42_104
Genus: Devosia (88.89%)
9 8473 bp 64.42 41.79 87.91
cn_combo_scaffold_620 PEL42_32
Genus: Devosia (94.74%)
57 66385 bp 64.96 41.80 91.01
cn_combo_scaffold_289 PEL42_20
Genus: Devosia (71.58%)
95 107375 bp 64.68 41.86 93.19
cn_combo_scaffold_375 PEL42_25
Species: Devosia chinhatensis (51.53%)
163 172942 bp 64.75 41.88 87.96
cn_combo_scaffold_1096 PEL42_54
Genus: Devosia (92.86%)
42 44773 bp 65.03 41.97 91.28
cn_combo_scaffold_224 PEL42_16
Species: Devosia chinhatensis (55.9%)
161 146906 bp 64.64 42.37 88.38
cn_combo_scaffold_374 PEL42_22
Genus: Devosia (77.78%)
90 93618 bp 65.38 42.38 89.42
cn_combo_scaffold_69 PEL42_6
Genus: Devosia (73.23%)
254 265028 bp 64.68 42.44 92.50
cn_combo_scaffold_309 PEL42_21
Species: Devosia chinhatensis (65.65%)
131 123177 bp 65.92 42.46 89.41
cn_combo_scaffold_632 PEL42_33
Species: Devosia chinhatensis (50.7%)
71 67104 bp 65.19 42.48 90.21
cn_combo_scaffold_2473 PEL42_79
Species: Devosia chinhatensis (53.13%)
32 22306 bp 65.82 42.50 89.44
Displaying items 1-50 of 111 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.