ggKbase home page
Advanced Search
Search Help

CN-SCN_Pelagibacterium_44x

CN-SCN_Devosia_64_44
In projects: CN-SCN

Consensus taxonomy: Devosia  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: CN-SCN_Unknown

Properties

Avg. coverage: 43.89 Longest contig: 352.51 Kbp Bin length: 8.15 Mbp GC content: 64.42 %
Contigs count: 111 Features count: 8007 rRNAs count: 0 tRNAs count: 85

Genome completeness

megabin RP 51 / 55 MC: 39 BSCG 50 / 51 MC: 37 ASCG 13 / 38 MC: 11

Description

Partial double 90

Displaying items 51-100 of 111 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
cn_combo_scaffold_371 PEL42_24
Genus: Devosia (69.7%)
132 144601 bp 64.50 43.07 90.02
cn_combo_scaffold_1045 PEL42_52
Genus: Devosia (78.69%)
61 64244 bp 65.84 44.98 89.99
cn_combo_scaffold_1299 PEL42_58
Species: Devosia chinhatensis (58.97%)
39 39066 bp 65.07 39.80 89.97
cn_combo_scaffold_411 PEL42_26
Genus: Devosia (67.78%)
90 86753 bp 64.15 39.68 89.96
cn_combo_scaffold_156 PEL42_12
Order: Rhizobiales (67.84%)
171 162755 bp 64.44 45.35 89.89
cn_combo_scaffold_10435 PEL42_113
Species: Oligotropha carboxidovorans (72.73%)
11 6072 bp 65.73 69.88 89.87
cn_combo_scaffold_2313 PEL42_77
Species: Devosia chinhatensis (65.31%)
49 43600 bp 66.39 43.35 89.85
cn_combo_scaffold_3180 PEL42_90
Genus: Devosia (68.18%)
22 17940 bp 61.08 45.76 89.80
cn_combo_scaffold_539 PEL42_40
Genus: Devosia (71.31%)
251 249947 bp 65.27 44.44 89.78
cn_combo_scaffold_1649 PEL42_68
Species: Devosia chinhatensis (68%)
25 31876 bp 62.76 38.27 89.73
cn_combo_scaffold_2538 PEL42_83
Order: Rhizobiales (80%)
25 21890 bp 61.01 40.37 89.71
cn_combo_scaffold_5232 PEL42_98
Order: Rhizobiales (94.12%)
17 18290 bp 62.53 55.68 89.51
cn_combo_scaffold_2473 PEL42_79
Species: Devosia chinhatensis (53.13%)
32 22306 bp 65.82 42.50 89.44
cn_combo_scaffold_374 PEL42_22
Genus: Devosia (77.78%)
90 93618 bp 65.38 42.38 89.42
cn_combo_scaffold_309 PEL42_21
Species: Devosia chinhatensis (65.65%)
131 123177 bp 65.92 42.46 89.41
cn_combo_scaffold_801 PEL42_46
Species: Devosia chinhatensis (58.97%)
117 119994 bp 65.77 43.08 89.27
cn_combo_scaffold_1310 PEL42_60
Order: Rhizobiales (50.88%)
57 55800 bp 62.42 39.04 89.04
cn_combo_scaffold_537 PEL42_29
Genus: Devosia (67.06%)
85 74063 bp 64.67 43.45 88.91
cn_combo_scaffold_283 PEL42_18
Order: Rhizobiales (81.61%)
87 109063 bp 62.57 40.55 88.86
cn_combo_scaffold_6850 PEL42_103
Class: Alphaproteobacteria (100%)
9 8903 bp 63.06 48.24 88.86
cn_combo_scaffold_2609 PEL42_85
Genus: Devosia (77.78%)
18 21376 bp 65.05 45.34 88.85
cn_combo_scaffold_8486 PEL42_107
Order: Rhizobiales (77.78%)
9 7361 bp 59.95 49.93 88.85
cn_combo_scaffold_1849 PEL42_71
Genus: Devosia (73.53%)
34 30441 bp 62.59 35.90 88.83
cn_combo_scaffold_197 PEL42_15
Genus: Devosia (78%)
150 130048 bp 63.85 45.87 88.80
cn_combo_scaffold_63 PEL42_5
Genus: Devosia (94.18%)
189 204087 bp 65.21 44.61 88.79
cn_combo_scaffold_677 PEL42_37
Order: Rhizobiales (68.42%)
57 62794 bp 63.04 43.43 88.68
cn_combo_scaffold_445 PEL42_28
Genus: Devosia (60.47%)
129 107761 bp 65.72 40.58 88.62
cn_combo_scaffold_224 PEL42_16
Species: Devosia chinhatensis (55.9%)
161 146906 bp 64.64 42.37 88.38
cn_combo_scaffold_745 PEL42_41
Genus: Devosia (75%)
60 59624 bp 64.71 45.56 88.35
cn_combo_scaffold_1303 PEL42_59
Species: Devosia chinhatensis (61.9%)
42 38992 bp 64.52 40.00 88.28
cn_combo_scaffold_1776 PEL42_69
Species: Xanthobacter autotrophicus (81.25%)
32 30170 bp 66.28 35.97 88.13
cn_combo_scaffold_1255 PEL42_57
Species: Devosia chinhatensis (69.7%)
66 67800 bp 64.59 39.13 88.09
cn_combo_scaffold_1323 PEL42_62
Species: Devosia chinhatensis (56%)
50 46105 bp 64.28 39.56 88.04
cn_combo_scaffold_1861 PEL42_72
Species: Devosia chinhatensis (80.43%)
46 34543 bp 64.32 40.14 88.03
cn_combo_scaffold_375 PEL42_25
Species: Devosia chinhatensis (51.53%)
163 172942 bp 64.75 41.88 87.96
cn_combo_scaffold_7229 PEL42_104
Genus: Devosia (88.89%)
9 8473 bp 64.42 41.79 87.91
cn_combo_scaffold_740 PEL42_42
Genus: Devosia (51.43%)
140 135766 bp 62.04 72.33 87.91
cn_combo_scaffold_260 PEL42_17
Genus: Devosia (82.03%)
128 114305 bp 63.38 43.01 87.82
cn_combo_scaffold_2281 PEL42_76
Species: Devosia chinhatensis (60.61%)
33 38053 bp 63.43 39.62 87.61
cn_combo_scaffold_2243 PEL42_74
Genus: Devosia (100%)
25 24433 bp 65.05 45.04 87.09
cn_combo_scaffold_931 PEL42_50
Genus: Devosia (84.62%)
52 58668 bp 65.31 41.51 87.06
cn_combo_scaffold_711 PEL42_38
Species: Devosia chinhatensis (58.06%)
62 61241 bp 65.73 41.37 87.01
cn_combo_scaffold_837 PEL42_45
Order: Rhizobiales (72.58%)
62 56534 bp 62.40 44.08 86.99
cn_combo_scaffold_6134 PEL42_101
Genus: Devosia (93.75%)
16 15516 bp 64.92 42.50 86.89
cn_combo_scaffold_2965 PEL42_89
Genus: Devosia (80.95%)
42 33365 bp 64.60 40.75 86.79
cn_combo_scaffold_9989 PEL42_112
Genus: Devosia (100%)
7 6323 bp 66.38 41.21 86.78
cn_combo_scaffold_725 PEL42_39
Domain: Bacteria (51.76%)
85 65066 bp 63.46 44.09 86.54
cn_combo_scaffold_9235 PEL42_109
Species: Devosia chinhatensis (66.67%)
6 6811 bp 63.10 40.18 86.24
cn_combo_scaffold_4665 PEL42_95
Species: Devosia chinhatensis (73.33%)
15 12605 bp 63.74 43.49 84.92
cn_combo_scaffold_1614 PEL42_67
Genus: Devosia (70.59%)
34 32388 bp 62.45 37.42 84.73
Displaying items 51-100 of 111 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.