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2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

In projects: 2019_SCN_bioreactor_200211_biofilm  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 2019_SCN_bioreactor_200211_biofilm_UNK

Properties

Avg. coverage: 15.46 Longest contig: 373.91 Kbp Bin length: 7.56 Mbp GC content: 69.51 %
Contigs count: 104 Features count: 7229 rRNAs count: 0 tRNAs count: 43

Genome completeness

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Displaying items 51-100 of 104 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
berkeley_reactor_200306_biofilm_scaffold_112330
Order: Rhizobiales (57.14%)
14 12471 bp 70.31 15.32 92.52
berkeley_reactor_200306_biofilm_scaffold_93794
Order: Rhizobiales (60%)
5 3035 bp 66.29 15.32 82.34
berkeley_reactor_200306_biofilm_scaffold_59887
Order: Rhizobiales (66.67%)
9 4666 bp 66.55 15.33 70.62
berkeley_reactor_200306_biofilm_scaffold_79982
Order: Rhizobiales (71.93%)
114 119859 bp 69.73 15.33 89.55
berkeley_reactor_200306_biofilm_scaffold_154203
Order: Rhizobiales (72.22%)
18 17979 bp 68.59 15.33 90.66
berkeley_reactor_200306_biofilm_scaffold_27699
Order: Rhizobiales (64.71%)
17 15847 bp 70.18 15.34 90.19
berkeley_reactor_200306_biofilm_scaffold_10611
Order: Rhizobiales (66.67%)
102 108552 bp 69.53 15.39 89.25
berkeley_reactor_200306_biofilm_scaffold_83611
Order: Rhizobiales (66.67%)
36 37395 bp 69.72 15.44 92.50
berkeley_reactor_200306_biofilm_scaffold_61682
Order: Rhizobiales (76.19%)
42 47550 bp 67.03 15.44 88.10
berkeley_reactor_200306_biofilm_scaffold_8117
Order: Rhizobiales (72.73%)
33 43627 bp 70.53 15.45 91.75
berkeley_reactor_200306_biofilm_scaffold_154490
Order: Rhizobiales (75.45%)
110 106361 bp 70.16 15.45 89.63
berkeley_reactor_200306_biofilm_scaffold_139709
Order: Rhizobiales (52.34%)
214 236897 bp 69.62 15.49 90.82
berkeley_reactor_200306_biofilm_scaffold_41811
Order: Rhizobiales (56.59%)
311 338217 bp 69.19 15.49 91.09
berkeley_reactor_200306_biofilm_scaffold_66949
Order: Rhizobiales (55.37%)
121 126269 bp 69.53 15.53 89.83
berkeley_reactor_200306_biofilm_scaffold_96262
Order: Rhizobiales (70%)
20 18996 bp 70.81 15.54 89.92
berkeley_reactor_200306_biofilm_scaffold_158730
Order: Rhizobiales (70.37%)
27 31897 bp 69.99 15.54 83.85
berkeley_reactor_200306_biofilm_scaffold_112583
Order: Rhizobiales (50.6%)
83 92787 bp 70.40 15.54 92.38
berkeley_reactor_200306_biofilm_scaffold_16012
Order: Rhizobiales (53.09%)
81 80573 bp 69.93 15.55 88.78
berkeley_reactor_200306_biofilm_scaffold_53974
Order: Rhizobiales (58.06%)
62 67845 bp 70.37 15.57 90.68
berkeley_reactor_200306_biofilm_scaffold_37123
Order: Rhizobiales (80%)
35 36701 bp 70.12 15.60 90.77
berkeley_reactor_200306_biofilm_scaffold_102636
Order: Rhizobiales (68.18%)
44 47278 bp 68.43 15.60 91.16
berkeley_reactor_200306_biofilm_scaffold_10683
Order: Rhizobiales (63.27%)
226 229361 bp 68.35 15.61 89.32
berkeley_reactor_200306_biofilm_scaffold_5879
Order: Rhizobiales (55.12%)
127 129561 bp 69.28 15.62 91.56
berkeley_reactor_200306_biofilm_scaffold_28866
Order: Rhizobiales (64.06%)
64 76605 bp 69.14 15.62 86.87
berkeley_reactor_200306_biofilm_scaffold_24940
Order: Rhizobiales (71.15%)
104 110232 bp 69.61 15.66 88.44
berkeley_reactor_200306_biofilm_scaffold_54892
Order: Rhizobiales (62.14%)
140 152845 bp 69.04 15.67 89.17
berkeley_reactor_200306_biofilm_scaffold_35412
Order: Rhizobiales (63.64%)
319 344766 bp 69.31 15.68 90.74
berkeley_reactor_200306_biofilm_scaffold_9338
Order: Rhizobiales (65.38%)
234 240832 bp 70.15 15.69 90.65
berkeley_reactor_200306_biofilm_scaffold_132711
Genus: Mesorhizobium (54.69%)
64 69231 bp 68.34 15.69 91.28
berkeley_reactor_200306_biofilm_scaffold_22810
Order: Rhizobiales (57.82%)
147 150696 bp 69.77 15.71 89.21
berkeley_reactor_200306_biofilm_scaffold_131415
Order: Rhizobiales (57.14%)
70 80031 bp 68.01 15.72 88.64
berkeley_reactor_200306_biofilm_scaffold_87643
Order: Rhizobiales (54.02%)
174 170174 bp 67.29 15.75 88.78
berkeley_reactor_200306_biofilm_scaffold_4471
Order: Rhizobiales (61.67%)
60 61996 bp 69.13 15.75 91.09
berkeley_reactor_200306_biofilm_scaffold_28919
Order: Rhizobiales (66.67%)
132 152295 bp 68.99 15.76 90.65
berkeley_reactor_200306_biofilm_scaffold_28991
Order: Rhizobiales (54%)
50 52194 bp 67.10 15.76 90.59
berkeley_reactor_200306_biofilm_scaffold_48742
Order: Rhizobiales (55.07%)
69 70981 bp 70.45 15.76 90.50
berkeley_reactor_200306_biofilm_scaffold_24673
Order: Rhizobiales (70.37%)
81 78814 bp 70.28 15.78 92.19
berkeley_reactor_200306_biofilm_scaffold_41009
Order: Rhizobiales (59.3%)
86 91549 bp 68.99 15.79 86.78
berkeley_reactor_200306_biofilm_scaffold_73177
Order: Rhizobiales (50.46%)
109 109851 bp 70.21 15.83 90.73
berkeley_reactor_200306_biofilm_scaffold_63135
Order: Rhizobiales (61.33%)
75 75479 bp 70.10 15.88 91.63
berkeley_reactor_200306_biofilm_scaffold_116353
Order: Rhizobiales (62.73%)
110 114335 bp 67.66 15.90 91.02
berkeley_reactor_200306_biofilm_scaffold_44227
Order: Rhizobiales (64%)
50 52286 bp 69.13 15.90 88.97
berkeley_reactor_200306_biofilm_scaffold_56793
Order: Rhizobiales (55.56%)
90 90214 bp 68.87 15.93 89.75
berkeley_reactor_200306_biofilm_scaffold_57697
Order: Rhizobiales (66.67%)
9 7313 bp 69.38 15.98 87.17
berkeley_reactor_200306_biofilm_scaffold_141566
Order: Rhizobiales (68.69%)
99 115315 bp 70.02 16.00 92.26
berkeley_reactor_200306_biofilm_scaffold_45995
Order: Rhizobiales (80%)
25 23589 bp 69.55 16.05 85.60
berkeley_reactor_200306_biofilm_scaffold_58265
Order: Rhizobiales (72.55%)
51 48677 bp 69.62 16.08 89.46
berkeley_reactor_200306_biofilm_scaffold_151446
Order: Rhizobiales (56.57%)
99 104519 bp 69.28 16.20 90.28
berkeley_reactor_200306_biofilm_scaffold_55848
Order: Rhizobiales (59.32%)
118 121096 bp 70.13 16.21 90.74
berkeley_reactor_200306_biofilm_scaffold_18395
Order: Rhizobiales (84.62%)
13 19329 bp 69.08 16.29 87.44
Displaying items 51-100 of 104 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.