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2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

In projects: 2019_SCN_bioreactor_200211_biofilm  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 2019_SCN_bioreactor_200211_biofilm_UNK

Properties

Avg. coverage: 15.46 Longest contig: 373.91 Kbp Bin length: 7.56 Mbp GC content: 69.51 %
Contigs count: 104 Features count: 7229 rRNAs count: 0 tRNAs count: 43

Genome completeness

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Displaying items 1-50 of 104 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
berkeley_reactor_200306_biofilm_scaffold_143570
Species: Methyloceanibacter caenitepidi (100%)
2 1234 bp 67.42 17.26 100.65
berkeley_reactor_200306_biofilm_scaffold_123522
Order: Rhizobiales (85.71%)
7 8197 bp 69.57 15.21 95.89
berkeley_reactor_200306_biofilm_scaffold_140837
Order: Rhizobiales (80.33%)
61 62841 bp 70.97 15.27 93.55
berkeley_reactor_200306_biofilm_scaffold_106759
Order: Rhizobiales (67.92%)
53 57416 bp 69.79 15.29 92.86
berkeley_reactor_200306_biofilm_scaffold_88389
Order: Rhizobiales (86.67%)
15 15450 bp 71.03 14.83 92.78
berkeley_reactor_200306_biofilm_scaffold_112330
Order: Rhizobiales (57.14%)
14 12471 bp 70.31 15.32 92.52
berkeley_reactor_200306_biofilm_scaffold_83611
Order: Rhizobiales (66.67%)
36 37395 bp 69.72 15.44 92.50
berkeley_reactor_200306_biofilm_scaffold_112583
Order: Rhizobiales (50.6%)
83 92787 bp 70.40 15.54 92.38
berkeley_reactor_200306_biofilm_scaffold_141566
Order: Rhizobiales (68.69%)
99 115315 bp 70.02 16.00 92.26
berkeley_reactor_200306_biofilm_scaffold_24673
Order: Rhizobiales (70.37%)
81 78814 bp 70.28 15.78 92.19
berkeley_reactor_200306_biofilm_scaffold_127933
Order: Rhizobiales (67.8%)
59 62756 bp 70.18 15.19 92.11
berkeley_reactor_200306_biofilm_scaffold_130994
Genus: Mesorhizobium (83.33%)
12 10818 bp 68.15 15.28 92.07
berkeley_reactor_200306_biofilm_scaffold_2007
Order: Rhizobiales (65%)
20 22224 bp 70.32 14.52 92.01
berkeley_reactor_200306_biofilm_scaffold_116766
Order: Rhizobiales (63.79%)
116 128301 bp 69.19 15.25 91.91
berkeley_reactor_200306_biofilm_scaffold_8117
Order: Rhizobiales (72.73%)
33 43627 bp 70.53 15.45 91.75
berkeley_reactor_200306_biofilm_scaffold_63135
Order: Rhizobiales (61.33%)
75 75479 bp 70.10 15.88 91.63
berkeley_reactor_200306_biofilm_scaffold_132831
Order: Rhizobiales (73.81%)
42 40798 bp 70.94 15.18 91.60
berkeley_reactor_200306_biofilm_scaffold_5879
Order: Rhizobiales (55.12%)
127 129561 bp 69.28 15.62 91.56
berkeley_reactor_200306_biofilm_scaffold_7733
Order: Rhizobiales (57.63%)
59 73603 bp 71.09 14.67 91.43
berkeley_reactor_200306_biofilm_scaffold_23616
Order: Rhizobiales (67.27%)
110 116015 bp 70.81 14.80 91.42
berkeley_reactor_200306_biofilm_scaffold_95231
Order: Rhizobiales (62.73%)
373 373914 bp 69.43 15.14 91.33
berkeley_reactor_200306_biofilm_scaffold_162782
Species: Bradyrhizobium diazoefficiens (50%)
2 4068 bp 66.72 17.11 91.30
berkeley_reactor_200306_biofilm_scaffold_132711
Genus: Mesorhizobium (54.69%)
64 69231 bp 68.34 15.69 91.28
berkeley_reactor_200306_biofilm_scaffold_102636
Order: Rhizobiales (68.18%)
44 47278 bp 68.43 15.60 91.16
berkeley_reactor_200306_biofilm_scaffold_67262
Order: Rhizobiales (83.33%)
6 10691 bp 71.17 15.04 91.14
berkeley_reactor_200306_biofilm_scaffold_4471
Order: Rhizobiales (61.67%)
60 61996 bp 69.13 15.75 91.09
berkeley_reactor_200306_biofilm_scaffold_41811
Order: Rhizobiales (56.59%)
311 338217 bp 69.19 15.49 91.09
berkeley_reactor_200306_biofilm_scaffold_116353
Order: Rhizobiales (62.73%)
110 114335 bp 67.66 15.90 91.02
berkeley_reactor_200306_biofilm_scaffold_37757
Order: Rhizobiales (60%)
10 10098 bp 71.63 13.61 91.00
berkeley_reactor_200306_biofilm_scaffold_139709
Order: Rhizobiales (52.34%)
214 236897 bp 69.62 15.49 90.82
berkeley_reactor_200306_biofilm_scaffold_37123
Order: Rhizobiales (80%)
35 36701 bp 70.12 15.60 90.77
berkeley_reactor_200306_biofilm_scaffold_35412
Order: Rhizobiales (63.64%)
319 344766 bp 69.31 15.68 90.74
berkeley_reactor_200306_biofilm_scaffold_55848
Order: Rhizobiales (59.32%)
118 121096 bp 70.13 16.21 90.74
berkeley_reactor_200306_biofilm_scaffold_73177
Order: Rhizobiales (50.46%)
109 109851 bp 70.21 15.83 90.73
berkeley_reactor_200306_biofilm_scaffold_21758
Order: Rhizobiales (75%)
20 24378 bp 71.38 15.20 90.70
berkeley_reactor_200306_biofilm_scaffold_53974
Order: Rhizobiales (58.06%)
62 67845 bp 70.37 15.57 90.68
berkeley_reactor_200306_biofilm_scaffold_107365
Order: Rhizobiales (50%)
6 5750 bp 70.21 15.13 90.68
berkeley_reactor_200306_biofilm_scaffold_154203
Order: Rhizobiales (72.22%)
18 17979 bp 68.59 15.33 90.66
berkeley_reactor_200306_biofilm_scaffold_9338
Order: Rhizobiales (65.38%)
234 240832 bp 70.15 15.69 90.65
berkeley_reactor_200306_biofilm_scaffold_28919
Order: Rhizobiales (66.67%)
132 152295 bp 68.99 15.76 90.65
berkeley_reactor_200306_biofilm_scaffold_28991
Order: Rhizobiales (54%)
50 52194 bp 67.10 15.76 90.59
berkeley_reactor_200306_biofilm_scaffold_48742
Order: Rhizobiales (55.07%)
69 70981 bp 70.45 15.76 90.50
berkeley_reactor_200306_biofilm_scaffold_103592
Order: Rhizobiales (64.94%)
154 152324 bp 69.81 15.27 90.49
berkeley_reactor_200306_biofilm_scaffold_157852
Order: Rhizobiales (58.18%)
55 54805 bp 70.06 15.27 90.45
berkeley_reactor_200306_biofilm_scaffold_151446
Order: Rhizobiales (56.57%)
99 104519 bp 69.28 16.20 90.28
berkeley_reactor_200306_biofilm_scaffold_27699
Order: Rhizobiales (64.71%)
17 15847 bp 70.18 15.34 90.19
berkeley_reactor_200306_biofilm_scaffold_131489
Order: Rhizobiales (81.82%)
11 13548 bp 67.94 14.97 90.17
berkeley_reactor_200306_biofilm_scaffold_118653
Order: Rhizobiales (57.81%)
64 67911 bp 70.30 14.99 90.05
berkeley_reactor_200306_biofilm_scaffold_12839
Order: Rhizobiales (77.33%)
75 72513 bp 70.66 14.76 89.95
berkeley_reactor_200306_biofilm_scaffold_96262
Order: Rhizobiales (70%)
20 18996 bp 70.81 15.54 89.92
Displaying items 1-50 of 104 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.