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2019_SCN_bioreactor_200211_biofilm_Rhizobiales_70_15

In projects: 2019_SCN_bioreactor_200211_biofilm  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 2019_SCN_bioreactor_200211_biofilm_UNK

Properties

Avg. coverage: 15.46 Longest contig: 373.91 Kbp Bin length: 7.56 Mbp GC content: 69.51 %
Contigs count: 104 Features count: 7229 rRNAs count: 0 tRNAs count: 43

Genome completeness

near complete RP 48 / 55 BSCG 46 / 51 ASCG 10 / 38 MC: 1
Displaying items 51-100 of 104 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
berkeley_reactor_200306_biofilm_scaffold_66949
Order: Rhizobiales (55.37%)
121 126269 bp 69.53 15.53 89.83
berkeley_reactor_200306_biofilm_scaffold_56793
Order: Rhizobiales (55.56%)
90 90214 bp 68.87 15.93 89.75
berkeley_reactor_200306_biofilm_scaffold_154490
Order: Rhizobiales (75.45%)
110 106361 bp 70.16 15.45 89.63
berkeley_reactor_200306_biofilm_scaffold_150155
Order: Rhizobiales (90.91%)
22 24102 bp 72.09 14.51 89.62
berkeley_reactor_200306_biofilm_scaffold_44015
Order: Rhizobiales (65.04%)
123 115513 bp 68.89 15.20 89.59
berkeley_reactor_200306_biofilm_scaffold_34479
Order: Rhizobiales (61.97%)
142 160630 bp 69.63 15.19 89.59
berkeley_reactor_200306_biofilm_scaffold_79982
Order: Rhizobiales (71.93%)
114 119859 bp 69.73 15.33 89.55
berkeley_reactor_200306_biofilm_scaffold_125732
Order: Rhizobiales (76.92%)
13 13179 bp 70.52 14.33 89.51
berkeley_reactor_200306_biofilm_scaffold_58265
Order: Rhizobiales (72.55%)
51 48677 bp 69.62 16.08 89.46
berkeley_reactor_200306_biofilm_scaffold_56669
Order: Rhizobiales (63.64%)
44 46748 bp 69.63 14.91 89.46
berkeley_reactor_200306_biofilm_scaffold_12255
Order: Rhizobiales (63.1%)
187 195104 bp 69.63 15.25 89.42
berkeley_reactor_200306_biofilm_scaffold_46954
Order: Rhizobiales (54.55%)
22 24988 bp 66.96 13.81 89.35
berkeley_reactor_200306_biofilm_scaffold_154241
Order: Rhizobiales (67.86%)
56 57861 bp 70.35 14.85 89.32
berkeley_reactor_200306_biofilm_scaffold_10683
Order: Rhizobiales (63.27%)
226 229361 bp 68.35 15.61 89.32
berkeley_reactor_200306_biofilm_scaffold_106678
Order: Rhizobiales (53.66%)
41 37962 bp 70.41 15.04 89.26
berkeley_reactor_200306_biofilm_scaffold_10611
Order: Rhizobiales (66.67%)
102 108552 bp 69.53 15.39 89.25
berkeley_reactor_200306_biofilm_scaffold_22810
Order: Rhizobiales (57.82%)
147 150696 bp 69.77 15.71 89.21
berkeley_reactor_200306_biofilm_scaffold_38380
Species: Mesorhizobium ciceri (100%)
1 1537 bp 68.18 14.64 89.20
berkeley_reactor_200306_biofilm_scaffold_54892
Order: Rhizobiales (62.14%)
140 152845 bp 69.04 15.67 89.17
berkeley_reactor_200306_biofilm_scaffold_44227
Order: Rhizobiales (64%)
50 52286 bp 69.13 15.90 88.97
berkeley_reactor_200306_biofilm_scaffold_87643
Order: Rhizobiales (54.02%)
174 170174 bp 67.29 15.75 88.78
berkeley_reactor_200306_biofilm_scaffold_16012
Order: Rhizobiales (53.09%)
81 80573 bp 69.93 15.55 88.78
berkeley_reactor_200306_biofilm_scaffold_115287
Order: Rhizobiales (62.96%)
81 84242 bp 70.87 15.05 88.75
berkeley_reactor_200306_biofilm_scaffold_113505
Order: Rhizobiales (76.19%)
21 22638 bp 69.21 15.16 88.71
berkeley_reactor_200306_biofilm_scaffold_131415
Order: Rhizobiales (57.14%)
70 80031 bp 68.01 15.72 88.64
berkeley_reactor_200306_biofilm_scaffold_65599
Order: Rhizobiales (82.14%)
28 26151 bp 69.89 14.77 88.52
berkeley_reactor_200306_biofilm_scaffold_135355
Order: Rhizobiales (72.41%)
29 30145 bp 69.64 14.60 88.46
berkeley_reactor_200306_biofilm_scaffold_24940
Order: Rhizobiales (71.15%)
104 110232 bp 69.61 15.66 88.44
berkeley_reactor_200306_biofilm_scaffold_111575
Order: Rhizobiales (68.59%)
156 160912 bp 69.06 14.99 88.41
berkeley_reactor_200306_biofilm_scaffold_101524
Order: Rhizobiales (60.87%)
46 50240 bp 70.14 16.34 88.37
berkeley_reactor_200306_biofilm_scaffold_23687
Order: Rhizobiales (62.5%)
24 22226 bp 70.79 14.71 88.15
berkeley_reactor_200306_biofilm_scaffold_11784
Order: Rhizobiales (64.29%)
14 12601 bp 71.89 15.27 88.14
berkeley_reactor_200306_biofilm_scaffold_61682
Order: Rhizobiales (76.19%)
42 47550 bp 67.03 15.44 88.10
berkeley_reactor_200306_biofilm_scaffold_20018
Order: Rhizobiales (54.73%)
148 145153 bp 69.33 15.08 88.05
berkeley_reactor_200306_biofilm_scaffold_106013
Order: Rhizobiales (50%)
8 7394 bp 69.42 14.22 87.96
berkeley_reactor_200306_biofilm_scaffold_126567
Order: Rhizobiales (51.28%)
39 39369 bp 70.55 14.95 87.83
berkeley_reactor_200306_biofilm_scaffold_4811
Order: Rhizobiales (52.94%)
17 17309 bp 72.25 15.30 87.51
berkeley_reactor_200306_biofilm_scaffold_18395
Order: Rhizobiales (84.62%)
13 19329 bp 69.08 16.29 87.44
berkeley_reactor_200306_biofilm_scaffold_42397
Order: Rhizobiales (60%)
50 44660 bp 69.68 14.71 87.29
berkeley_reactor_200306_biofilm_scaffold_57697
Order: Rhizobiales (66.67%)
9 7313 bp 69.38 15.98 87.17
berkeley_reactor_200306_biofilm_scaffold_28866
Order: Rhizobiales (64.06%)
64 76605 bp 69.14 15.62 86.87
berkeley_reactor_200306_biofilm_scaffold_41009
Order: Rhizobiales (59.3%)
86 91549 bp 68.99 15.79 86.78
berkeley_reactor_200306_biofilm_scaffold_15188
Order: Rhizobiales (50%)
10 15511 bp 69.75 15.31 86.74
berkeley_reactor_200306_biofilm_scaffold_70490
Order: Rhizobiales (64%)
25 19409 bp 70.43 16.58 86.09
berkeley_reactor_200306_biofilm_scaffold_4461
Order: Rhizobiales (76.92%)
13 14424 bp 68.05 14.98 85.65
berkeley_reactor_200306_biofilm_scaffold_45995
Order: Rhizobiales (80%)
25 23589 bp 69.55 16.05 85.60
berkeley_reactor_200306_biofilm_scaffold_150415
Order: Rhizobiales (61.54%)
26 22214 bp 68.89 15.09 85.21
berkeley_reactor_200306_biofilm_scaffold_158730
Order: Rhizobiales (70.37%)
27 31897 bp 69.99 15.54 83.85
berkeley_reactor_200306_biofilm_scaffold_118572
Species: Bradyrhizobium elkanii (50%)
2 1466 bp 67.39 15.14 83.29
berkeley_reactor_200306_biofilm_scaffold_93794
Order: Rhizobiales (60%)
5 3035 bp 66.29 15.32 82.34
Displaying items 51-100 of 104 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.